PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cla009931

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Trihelix

Protein Properties

Length: 349aa MW: 38880.1 Da PI: 10.4036

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009931	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.3	1.2e-15	60	142	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ ++ f++spk qCk+k+e+++kry+ + +++ + ++p++++l+ Cla009931 60 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEDVARHVsSRANFTKSPKtqtQCKNKIESMKKRYRSESASAAS-------SWPLYHRLH 142 5***********************************756667776643339***********999997.......49*9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.6E-19	58	142	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEMKGSPSSP PTSHTSPSLL FNHHHHHHHQ LPPAAAEDNP SPKKTPVSTG GGGDRLKRDE 60 WSEGAVSSLL EAYESKWVLR NRAKLKGHDW EDVARHVSSR ANFTKSPKTQ TQCKNKIESM 120 KKRYRSESAS AASSWPLYHR LHLLLRGNAT LTPPPPPSSH SPPPVILLDP PPPRPRPPPP 180 PPPPFLPPQN SHGSNGVDRI NPKEDGVDNG RGDESDELSE KNKKMVTETD SSTPAIVYSE 240 KEKVAMRPKQ QTKMKNNKKK KGTRLLTTED SLEQIAGSIR WLAEVVVRSE QARMEMIKDI 300 EKMRAEAEAK RGEMDLKRTQ IIANTQLEIA KLFASSTKPL DSSLRIGRT

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEMKGSPSSP PTSHTSPSLL FNHHHHHHHQ LPPAAAEDNP SPKKTPVSTG GGGDRLKRDE  60
WSEGAVSSLL EAYESKWVLR NRAKLKGHDW EDVARHVSSR ANFTKSPKTQ TQCKNKIESM  120
KKRYRSESAS AASSWPLYHR LHLLLRGNAT LTPPPPPSSH SPPPVILLDP PPPRPRPPPP  180
PPPPFLPPQN SHGSNGVDRI NPKEDGVDNG RGDESDELSE KNKKMVTETD SSTPAIVYSE  240
KEKVAMRPKQ QTKMKNNKKK KGTRLLTTED SLEQIAGSIR WLAEVVVRSE QARMEMIKDI  300
EKMRAEAEAK RGEMDLKRTQ IIANTQLEIA KLFASSTKPL DSSLRIGRT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	2e-72	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	2e-72	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023526851.1	1e-160	trihelix transcription factor ASIL1
TrEMBL	A0A1S3BGZ0	1e-124	A0A1S3BGZ0_CUCME; LOW QUALITY PROTEIN: trihelix transcription factor ASIL2
STRING	XP_008446967.1	1e-125	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	6e-89	sequence-specific DNA binding transcription factors