PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009929
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 314aa    MW: 36385.6 Da    PI: 8.5242
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009929genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.2e-062242323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C+ Cg  F+ + +Lk+H+++H
  Cla009929 22 CQECGAEFRKPAYLKQHMQSH 42
               *******************99 PP
2zf-C2H2163.4e-054872123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               y C+   C  s++rk++L+rH+  H
  Cla009929 48 YICSvdGCEASYRRKDHLTRHLLQH 72
               899999***************9887 PP
3zf-C2H221.94.7e-07115139123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++Cp   Cgk+F+  s+L++H  +H
  Cla009929 115 FVCPedGCGKVFRYASQLQKHEDSH 139
                89*******************9888 PP
4zf-C2H223.61.3e-07208231323
                ET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                C    C+k+Fs+ snL++H+++ H
  Cla009929 208 CRyeGCSKVFSTASNLQQHMKVvH 231
                77779****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.9462047IPR007087Zinc finger, C2H2
SMARTSM003550.0152042IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-72248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-103474No hitNo description
SMARTSM003550.00184872IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2244874IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-114974IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805072IPR007087Zinc finger, C2H2
SuperFamilySSF576673.21E-558108No hitNo description
SMARTSM003551.977102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.19677107IPR007087Zinc finger, C2H2
PROSITE patternPS00028079102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-8111139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.52E-5112140No hitNo description
SMARTSM003552.6E-4115139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074115144IPR007087Zinc finger, C2H2
PROSITE patternPS000280117139IPR007087Zinc finger, C2H2
SMARTSM003550.44147172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149172IPR007087Zinc finger, C2H2
SMARTSM003554.8175197IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.36E-8187243No hitNo description
SMARTSM003551.4E-4206231IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.321206236IPR007087Zinc finger, C2H2
PROSITE patternPS000280208231IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-8208231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEIGKHNDDG DDKTKNRKSN ICQECGAEFR KPAYLKQHMQ SHLLQRPYIC SVDGCEASYR  60
RKDHLTRHLL QHQGIIFKCP IESCNREFAY ISCVHRHLKE CHEGEAPPKK CQKQFVCPED  120
GCGKVFRYAS QLQKHEDSHV KLDSIEACCT EPGCLKTFTN KQCLRAHMQS CHQYIKCEIC  180
GEKKLRKNLK QHLRQKHESE GPLEAIPCRY EGCSKVFSTA SNLQQHMKVV HMGQKLFACC  240
FPGSGMRFGY KHVRDNHEKS GQHVYTNGDF EAADEQFRSK PRGGRKRICP TVEMLIRKRV  300
TPRSEFDFTM DEEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v3m_C4e-132227164314Zinc finger protein 568
5wjq_D4e-132226739285Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2841201e-108EU284120.1 Cucumis sativus C2H2 zinc finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142387.20.0PREDICTED: zinc finger X-linked protein ZXDB
SwissprotQ84MZ41e-115TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0A0KV540.0A0A0A0KV54_CUCSA; Uncharacterized protein
STRINGXP_008446968.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-118transcription factor IIIA