PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009903
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 291aa    MW: 33343.1 Da    PI: 6.7804
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009903genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-131062148
                     TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++ k++ ++     +W++++++ g+ R++k+c++rw +yl
        Cla009903 10 KGLWSPEEDEKLIKCMKRMLSNgsqsaCWSRVPKMAGLERCGKSCRLRWINYL 62
                     678**************999889****************************97 PP
2Myb_DNA-binding52.71e-1668110145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg +++eE+  ++d+++ lG++ W+ Ia++++ gRt++++k++w+
        Cla009903  68 RGCFSAEEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEIKNYWN 110
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-19465IPR009057Homeodomain-like
PROSITE profilePS5129413.331562IPR017930Myb domain
SuperFamilySSF466891.57E-248109IPR009057Homeodomain-like
SMARTSM007173.6E-10964IPR001005SANT/Myb domain
PfamPF002495.0E-121062IPR001005SANT/Myb domain
CDDcd001674.56E-81362No hitNo description
PROSITE profilePS5129425.91763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2566117IPR009057Homeodomain-like
SMARTSM007178.0E-1667115IPR001005SANT/Myb domain
PfamPF002493.8E-1568111IPR001005SANT/Myb domain
CDDcd001671.76E-1271110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MMIKGKKVKK GLWSPEEDEK LIKCMKRMLS NGSQSACWSR VPKMAGLERC GKSCRLRWIN  60
YLRPDLKRGC FSAEEERTII DVHRILGNRW AQIAKHLPGR TDNEIKNYWN SSIKKKLLAQ  120
GLDPNTHNLL PTPVAMANTN TSTPVLEPPL DIDIDIDNVN NTYLTALSLP IPMNNHELLS  180
QHHHLGMNNR INMLVDDDNG VDMLAEYQGR DGGINYNVMM MQQLQLQLQL QLQHCDVDDD  240
IDNYKTMCRT TTPDFRHLDF YFEDSSSVIP NIPPNPLLTD YTASSNQFQF A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29101177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439425.21e-125PREDICTED: transcription repressor MYB5-like
TrEMBLA0A1S3AZE11e-124A0A1S3AZE1_CUCME; transcription repressor MYB5-like
STRINGXP_008439425.11e-124(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.16e-66myb domain protein 67