PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cla009643

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HB-other

Protein Properties

Length: 1743aa MW: 197298 Da PI: 4.8237

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009643	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgLt+rq ++WF+ rR k+kk Cla009643 31 PKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKK 86 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-18	12	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-16	21	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	27	87	IPR001356	Homeobox domain
SMART	SM00389	6.6E-18	29	91	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	31	86	IPR001356	Homeobox domain
CDD	cd00086	1.35E-14	32	87	No hit	No description
PROSITE profile	PS50827	16.89	518	577	IPR018501	DDT domain
SMART	SM00571	1.1E-21	518	577	IPR018501	DDT domain
Pfam	PF02791	1.3E-18	519	574	IPR018501	DDT domain
Pfam	PF05066	2.6E-15	718	785	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.4E-5	926	965	IPR028942	WHIM1 domain
Pfam	PF15613	1.8E-11	1097	1167	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1743 aa Download sequence Send to blast
MEAAASDGEN HNQNNDNINK ISNSSEGLSK PKRQMKTPFQ LETLEKAYAL ETYPSESTRA 60 ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRKVAPAPP LPLPDSPIDE LRVVAEPGSD 120 YASGSGSGSS PFGDVGLRNV VPRSVGDDMP MMRRYYEPSR SVMELRAIAC VESQLGEPLR 180 EDGPILGIEF DPLPPDAFGA PIVAEQKRSG HSYGDKYEQR DTKSNKVTAR GFPEYPFMPD 240 QSNIRADAYG PVSQPHYQDS LGEVSAARTP SFLLGHEQLN RSHNYHNQVS RVRLLSQQEK 300 QGVAIPSPAX XXXLQFHLLL KTMHLSLQGI LLQSEEARLS KEAEAHEIRM RKELEKQDIL 360 RRKNEERMRK EMEKQDRERR REEERLLREK QREAERLKRE ERREHERREK FLQREYVRAE 420 KRKQKEAIRK EKEAVRRKAA IEKATARRIA RESMELIEDE QLELMELAAA NKGLPSILSL 480 DHDTLQNLES FRDYLGAFPP KSVQLKKPFG IQPWINSEEN IGNLLMVWRF FITFSDVLEL 540 WPFTLDEFVQ ALHDYDSRLL GEIHICLLRL IVKDIEDVAR TPSAGMGMNQ NGVANSGGGH 600 PQIVEGAYAW GFDICNWQKH LNPLTWPEIF RQLALSAGFG PQLRKRSLAM SEMRSNDEAK 660 CGEDVVSTLR NGSGAXXXXX XXXXXXXXXX SAAENAFAIM QEKGLLAPRR SRHRLTPGTV 720 KFAAFHVLSL EGSEGLTVLE LAEKIQRSGL RDLSTSKTPE ASISVALTRD TKLFERIAPS 780 TYRVRAPYRK DPDDAEEILS VARKKIQVFQ NGFLAGEDAD DVERDEESEC DDVDEDPEVD 840 DIATTSLVNE DISKGDANLG VENENLCQDI AGNPQNEIAK DISPFPLSGS KDTKYLNIPT 900 EQYAAVDETT ISDLDQENME IDESKEGESW IQGLTEGEYH DLSVEERLNA LIVLTSIANE 960 GNSIRLVLED RLEAANAVKK QMLTEAQIDK SRLKEEIITK SDFPIHIVSK VETELNGSTM 1020 DGGQSPFPVT DNKNNETTPS TAENFGSVPN ERGTLVPDLF PGPDNFLAQQ CGHASKRSRS 1080 QLKSYIAHRA EEMYTYRSLP LGRDRRRNRY WQFVASSSSN DPGSGRIFVE MYDGKWRLID 1140 SEEGFDALSL ALDTRGIRES HLRIMLQMIE TSFKENVRRN LQCANDMVRS GITPKNENDD 1200 SSSSPDCNTG FNSPSSTVCG LNLDTMATSS SFRIELGRNE NEKKAAFRRY QDMQRWMLRE 1260 CFSTSTVCAM KFGEKRCTSV LDICDSCLCL FDSQHSHCPS CHQTFGISGN DINFLEHIRH 1320 CERERKSNPL DTHVLDACLP LKSRLLKALL AFIEVHVPSE AFQSFWTEHR KDWGVRMKLS 1380 SSIEELLQIL TLFESVIKRD FLKSDFTTTD EHLSSCSISG NIIHDPADIG SVLTLPWIPR 1440 TSAAVALRLY EVDASIYYIG CEKPEPDQDK EVGEHINFSS RYVQVKNDER TKLNELDYDD 1500 LMKNENSADP KSLRNSYKRG RGSRDYGRRR KWQKKVNGSR SGRVRQNVKS NEKMNQEQRE 1560 LGQGTQVMGV RGRRTVRKRR AEKSTPDEGL LGLVPGSSTQ NIDESPKDYL GEWEDEKMDR 1620 FVDMEDEENV MEDEENVMED EENEENVNNV EAMDSDDDGQ GVGYEQGGWE FGFEGTSNRW 1680 NGDLGLGSDE DVDLSEDYNG TEEGGNDDIE ELDVDSSEES DCSPNRIGNN GGGESAVSDD 1740 YSD

Sequence ? help Back to Top

Protein Sequence Length: 1743 aa Download sequence Send to blast

MEAAASDGEN HNQNNDNINK ISNSSEGLSK PKRQMKTPFQ LETLEKAYAL ETYPSESTRA  60
ELSEKLGLTD RQLQMWFCHR RLKDKKEPAK KPRKVAPAPP LPLPDSPIDE LRVVAEPGSD  120
YASGSGSGSS PFGDVGLRNV VPRSVGDDMP MMRRYYEPSR SVMELRAIAC VESQLGEPLR  180
EDGPILGIEF DPLPPDAFGA PIVAEQKRSG HSYGDKYEQR DTKSNKVTAR GFPEYPFMPD  240
QSNIRADAYG PVSQPHYQDS LGEVSAARTP SFLLGHEQLN RSHNYHNQVS RVRLLSQQEK  300
QGVAIPSPAX XXXLQFHLLL KTMHLSLQGI LLQSEEARLS KEAEAHEIRM RKELEKQDIL  360
RRKNEERMRK EMEKQDRERR REEERLLREK QREAERLKRE ERREHERREK FLQREYVRAE  420
KRKQKEAIRK EKEAVRRKAA IEKATARRIA RESMELIEDE QLELMELAAA NKGLPSILSL  480
DHDTLQNLES FRDYLGAFPP KSVQLKKPFG IQPWINSEEN IGNLLMVWRF FITFSDVLEL  540
WPFTLDEFVQ ALHDYDSRLL GEIHICLLRL IVKDIEDVAR TPSAGMGMNQ NGVANSGGGH  600
PQIVEGAYAW GFDICNWQKH LNPLTWPEIF RQLALSAGFG PQLRKRSLAM SEMRSNDEAK  660
CGEDVVSTLR NGSGAXXXXX XXXXXXXXXX SAAENAFAIM QEKGLLAPRR SRHRLTPGTV  720
KFAAFHVLSL EGSEGLTVLE LAEKIQRSGL RDLSTSKTPE ASISVALTRD TKLFERIAPS  780
TYRVRAPYRK DPDDAEEILS VARKKIQVFQ NGFLAGEDAD DVERDEESEC DDVDEDPEVD  840
DIATTSLVNE DISKGDANLG VENENLCQDI AGNPQNEIAK DISPFPLSGS KDTKYLNIPT  900
EQYAAVDETT ISDLDQENME IDESKEGESW IQGLTEGEYH DLSVEERLNA LIVLTSIANE  960
GNSIRLVLED RLEAANAVKK QMLTEAQIDK SRLKEEIITK SDFPIHIVSK VETELNGSTM  1020
DGGQSPFPVT DNKNNETTPS TAENFGSVPN ERGTLVPDLF PGPDNFLAQQ CGHASKRSRS  1080
QLKSYIAHRA EEMYTYRSLP LGRDRRRNRY WQFVASSSSN DPGSGRIFVE MYDGKWRLID  1140
SEEGFDALSL ALDTRGIRES HLRIMLQMIE TSFKENVRRN LQCANDMVRS GITPKNENDD  1200
SSSSPDCNTG FNSPSSTVCG LNLDTMATSS SFRIELGRNE NEKKAAFRRY QDMQRWMLRE  1260
CFSTSTVCAM KFGEKRCTSV LDICDSCLCL FDSQHSHCPS CHQTFGISGN DINFLEHIRH  1320
CERERKSNPL DTHVLDACLP LKSRLLKALL AFIEVHVPSE AFQSFWTEHR KDWGVRMKLS  1380
SSIEELLQIL TLFESVIKRD FLKSDFTTTD EHLSSCSISG NIIHDPADIG SVLTLPWIPR  1440
TSAAVALRLY EVDASIYYIG CEKPEPDQDK EVGEHINFSS RYVQVKNDER TKLNELDYDD  1500
LMKNENSADP KSLRNSYKRG RGSRDYGRRR KWQKKVNGSR SGRVRQNVKS NEKMNQEQRE  1560
LGQGTQVMGV RGRRTVRKRR AEKSTPDEGL LGLVPGSSTQ NIDESPKDYL GEWEDEKMDR  1620
FVDMEDEENV MEDEENVMED EENEENVNNV EAMDSDDDGQ GVGYEQGGWE FGFEGTSNRW  1680
NGDLGLGSDE DVDLSEDYNG TEEGGNDDIE ELDVDSSEES DCSPNRIGNN GGGESAVSDD  1740
YSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439810.2	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A1S3AZ78	0.0	A0A1S3AZ78_CUCME; homeobox-DDT domain protein RLT1 isoform X1
STRING	XP_008439810.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1