PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla009629

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

SBP

Protein Properties

Length: 140aa MW: 15781.2 Da PI: 6.774

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009629	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.3	1.9e-42	54	129	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cq++gC+adls a+ yhrrhkvCe+h+ka++v+++gleqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk Cla009629 54 RCQADGCNADLSGARPYHRRHKVCEFHAKAAAVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRRLAGHNERRRKI 129 6*************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.6E-35	48	116	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.154	52	129	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.83E-39	53	133	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.0E-33	55	128	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MANSEDQGWD DMVVEEDDDN DDNEEIGFVE DERRRRSALT GGRGGSGGRT TVARCQADGC 60 NADLSGARPY HRRHKVCEFH AKAAAVILAG LEQRFCQQCS RFHAVSEFDD TKRSCRRRLA 120 GHNERRRKIL PDFHGQSSTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-36	45	128	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	4e-71	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	4e-71	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134953.1	5e-77	PREDICTED: squamosa promoter-binding protein 1
Swissprot	Q38741	1e-41	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A0A0KK74	1e-75	A0A0A0KK74_CUCSA; Uncharacterized protein
STRING	XP_004155646.1	2e-76	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	1e-38	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]