PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009424 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | DBB | ||||||||
Protein Properties | Length: 186aa MW: 20542.1 Da PI: 6.2131 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.9 | 3.5e-07 | 4 | 42 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++ e+ lfC+ +++ lC C H+ H Cla009424 4 QCDVCSKDEALLFCTADDVALCSPCDRRLHHPnllasnH 42 7******99******************997334555563 PP | |||||||
2 | zf-B_box | 26.1 | 1.8e-08 | 60 | 99 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e ++ lfC++++ lC+dC l +H+ H Cla009424 60 PLCDICQERRAFLFCQQDRAILCKDCDLPIHSMnqltrnH 99 68****************************9434555556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.808 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.31E-5 | 3 | 47 | No hit | No description |
SMART | SM00336 | 9.3E-4 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-15 | 57 | 104 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.883 | 57 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.74E-9 | 60 | 104 | No hit | No description |
Pfam | PF00643 | 5.1E-7 | 60 | 100 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MKIQCDVCSK DEALLFCTAD DVALCSPCDR RLHHPNLLAS NHHRFPLLHS NNNNNNNHFP 60 LCDICQERRA FLFCQQDRAI LCKDCDLPIH SMNQLTRNHQ RFLLTGVKLS SVSASLPNSN 120 SHPLPANDSS VAESSTSTAP TAAADAMNGV AEYLIEALPE WNFEEFLDSS STTAPPPPPF 180 GLSKVR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022981859.1 | 2e-80 | B-box zinc finger protein 21-like isoform X1 | ||||
Swissprot | Q9LQZ7 | 3e-50 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A0A0K5U5 | 2e-76 | A0A0A0K5U5_CUCSA; Uncharacterized protein | ||||
STRING | XP_008455255.1 | 3e-76 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 4e-42 | salt tolerance homolog2 |