PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009263
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 286aa    MW: 32793.2 Da    PI: 6.5325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009263genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
        Cla009263 14 RGRWTAEEDEKLKKYIEVYGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding55.51.3e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ede ++++++ lG++ W++Ia +++ gRt++++k++w+++l
        Cla009263  67 RGNITPQEDETILKLHTTLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129418.389961IPR017930Myb domain
SuperFamilySSF466891.05E-2911108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002491.7E-151461IPR001005SANT/Myb domain
CDDcd001671.96E-91661No hitNo description
PROSITE profilePS5129424.79362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2665116IPR009057Homeodomain-like
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002496.6E-1567112IPR001005SANT/Myb domain
CDDcd001674.08E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVRTPCCEKE GLRRGRWTAE EDEKLKKYIE VYGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTDLKRGNI TPQEDETILK LHTTLGNRWS LIAGHLPGRT DNEIKNYWNS HLSKKIYSTA  120
KKDAPQKSGI SKRARSHGRP NNKLILKKDK TTIPKESSES NSIAEEEPET TNPKEEQATS  180
SGKEQSTSDQ NSTTKDPKIE EENWELTTDG EKREYGVLST IIDSGEWFYS AWPSSSSMNS  240
NFNNEWMNWD WEGDGVLGQN VCENFKEPSS WFWANSNTNG EGEECR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819242e-50LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132652e-50LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458382.11e-136PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1S3C7U91e-134A0A1S3C7U9_CUCME; myb-related protein Myb4-like
STRINGXP_008458382.11e-135(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-67myb domain protein 12