 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cla009182 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family |
LBD |
Protein Properties |
Length: 172aa MW: 18645.2 Da PI: 8.4917 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cla009182 | genome | ICuGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 146.2 | 9e-46 | 17 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
+CaaCk+lrr+C ++Cv+apyfpa+qp+kfanvhk+FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e
Cla009182 17 PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAE 116
7**********************************************************************************************99976 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MKTENGRKQG GGTGAAPCAA CKLLRRRCGE ECVFAPYFPA DQPHKFANVH KVFGASNVNK 60 MLQELPIHQR GDAVSSLVYE ANARVRDPVY GCVGAISSLQ QQIDALQTQL ALAQAEVVHL 120 RVRQTAPFSN YGLSPTSPSN SGSPSSRLMG SQSRPMFEMD MVVDQAMGDS MW
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | LN681931 | 1e-136 | LN681931.1 Cucumis melo genomic scaffold, anchoredscaffold00049. |
GenBank | LN713266 | 1e-136 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |