PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla009127

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 642aa MW: 72130.2 Da PI: 4.6875

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla009127	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.2	1.3e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s +++ Cla009127 6 LPPGFRFHPTDEELVAYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QSR 103 79**************************.99***********6434555777**********************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktLv+y+grap+g +tdWvmheyrl Cla009127 104 AVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	62.249	6	157	IPR003441	NAC domain
Pfam	PF02365	4.9E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QSRAVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDDRECEV ASSGLQDAYA LCRVFKKSAT IAPKIEDNHP YSNITSSSNH 180 FINSSDQSSE PESSNYSMPF DAFQCQSQSQ SQLVNKDCNS FDMFAGTREA KWSQFLSQEA 240 FNATPSFPSY ANIPYPPSKV DIALECARLQ HRFTLPPLEV EDYPHSGYSD HFKTPQPTNP 300 TMLGGSSEAS TDILQEILSV AQASQELANQ SCALDATTWD GGLANNNNNN NVYACSTDQD 360 FTFMAAKDGF QDWNSAATFD VESSWEDPYS KCIDVGNAGD DIPVENLRWV GMSNKDLHKN 420 CMEGSKLVPI ENISNFQIED HQNQLQDQSI VISGEMNDFS LAFINEDVPN PNNFDMEGSG 480 NSMANYSSSP SFEVVEEIKV NHGLFISTRQ VAETFFHQTM PSETVKVQSL NSNFMAPNFI 540 SLHEINPQKT ASFSSLKKPW NNFQRKIVSI LELLLIFIVY SDEEEEGKDN NNGGEGEKLL 600 NEDEECRSNG KKGGALNMIL KKTGICFSIA SLAICTIWAN YI

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QSRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDDRECEV ASSGLQDAYA LCRVFKKSAT IAPKIEDNHP YSNITSSSNH  180
FINSSDQSSE PESSNYSMPF DAFQCQSQSQ SQLVNKDCNS FDMFAGTREA KWSQFLSQEA  240
FNATPSFPSY ANIPYPPSKV DIALECARLQ HRFTLPPLEV EDYPHSGYSD HFKTPQPTNP  300
TMLGGSSEAS TDILQEILSV AQASQELANQ SCALDATTWD GGLANNNNNN NVYACSTDQD  360
FTFMAAKDGF QDWNSAATFD VESSWEDPYS KCIDVGNAGD DIPVENLRWV GMSNKDLHKN  420
CMEGSKLVPI ENISNFQIED HQNQLQDQSI VISGEMNDFS LAFINEDVPN PNNFDMEGSG  480
NSMANYSSSP SFEVVEEIKV NHGLFISTRQ VAETFFHQTM PSETVKVQSL NSNFMAPNFI  540
SLHEINPQKT ASFSSLKKPW NNFQRKIVSI LELLLIFIVY SDEEEEGKDN NNGGEGEKLL  600
NEDEECRSNG KKGGALNMIL KKTGICFSIA SLAICTIWAN YI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-56	2	157	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681894	1e-178	LN681894.1 Cucumis melo genomic scaffold, anchoredscaffold00074.
GenBank	LN713263	1e-178	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463166.1	0.0	PREDICTED: NAC domain-containing protein 45
Swissprot	A4VCM0	1e-108	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A1S3CK50	0.0	A0A1S3CK50_CUCME; NAC domain-containing protein 45
STRING	XP_004157040.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-152	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]