PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009078
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 295aa    MW: 31315.7 Da    PI: 6.8488
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009078genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.2e-101255445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     W+ e d+ + +a + ++ +   +W++Ia  ++ g+t +++k+++ 
        Cla009078 12 WSLEQDKAFENALASHPEDdsdRWEKIAFDVP-GKTIEEIKHHYE 55
                     ********************************.**********96 PP
2Myb_DNA-binding422.1e-13122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
        Cla009078 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.9E-7860IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-101066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-41155IPR009057Homeodomain-like
CDDcd001671.06E-71258No hitNo description
PROSITE profilePS500906.5161258IPR017877Myb-like domain
PfamPF002498.6E-81255IPR001005SANT/Myb domain
PROSITE profilePS5129417.581114171IPR017930Myb domain
SuperFamilySSF466891.27E-16117172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17119169IPR006447Myb domain, plants
SMARTSM007173.2E-10119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10122165IPR009057Homeodomain-like
CDDcd001678.38E-10122167No hitNo description
PfamPF002492.7E-11122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTVDEAGSSS LWSLEQDKAF ENALASHPED DSDRWEKIAF DVPGKTIEEI KHHYELLVED  60
VNLIESGCVP LPSYSSSSDG SASHAGDEGT TKKNGHFGHC NGDSNHGTKT SRSDQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKERRRS  180
SIHDITSVTN GDISAAQGPI TGQANGSGAA PSGKPTKQPP QSAAGPPGVG MYGGPTMGQP  240
VGGPLVSAVG TPVSLPAPAH MAYGVQAPVP GTVVPGAPVN MGPMTYPMPH TSAHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-17777676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149865.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011655162.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011655163.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011655164.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011655165.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011655166.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-128SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0A0KTA80.0A0A0A0KTA8_CUCSA; Uncharacterized protein
STRINGXP_004149865.10.0(Cucumis sativus)
STRINGXP_004172523.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-110MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]