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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla009013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20614.2 Da PI: 10.8727 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.5 | 5.3e-16 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+ r+ tf kR++g+lKK EL +LC++e++ iifs+ Cla009013 11 ITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSP 50 89*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.423 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.49E-18 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-23 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-17 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MTRKKVKLAY ITNDAARKAT FKKRKKGLLK KLTELTTLCG IEACAIIFSP FDSQLDLWPS 60 TLGFQRVLSK FKSLPEMEQG KKMVNQETFL RDRIAKAADQ LKKLQRENRE KEIARLMFQS 120 LVVGATPPPD LNVIDLNDLG WLVDQTIVDI NKRMGLLTAK QPPRVEAGGG GGGWSRRGSW 180 RW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAYITNDAARKATFKKRK |
2 | 16 | 31 | RKATFKKRKKGLLKKL |
3 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139619.1 | 5e-87 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_008458956.1 | 6e-87 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 5e-56 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0A0LVU5 | 1e-85 | A0A0A0LVU5_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3C968 | 1e-85 | A0A1S3C968_CUCME; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_004167022.1 | 1e-86 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-50 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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