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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cla008890 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family |
bHLH |
Protein Properties |
Length: 463aa MW: 51021.9 Da PI: 8.9666 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cla008890 | genome | ICuGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 42.6 | 1.1e-13 | 279 | 324 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+++N++f Lr+++P+ K++Ka+ L A +YI++L
Cla008890 279 NHVEAERQRRQKLNQRFYALRSVVPNV-----SKMDKASLLADAADYIREL 324
799***********************6.....5****************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 463 aa
Download sequence Send
to blast |
MDDIIISPSS SSPNSTTPTL QQRLQFILHN RPEWWAYSIF WWASKDITGN LIFTWRDGHL 60 RGTRDGGGSG GGGQLISFGF DEVSVDRVGG ADFTNLEWYY TVSITRSYGA VDNVVGRVFD 120 SSAYIWLTAD DDGLHLYECE RVKEARSRGI QTLVFVSTSV GVLELGSSEL IKQDWNLVQY 180 AKSLFGSASS SSFTLFKQKD HVGTGGGGII IQPQAPSCSD VVKKEMSRDG GRGGGGSSSD 240 SLSDNSDGNF MSIVNNNNVD NKRGKRSAKN KTESSLPVNH VEAERQRRQK LNQRFYALRS 300 VVPNVSKMDK ASLLADAADY IRELKSKVQK LESKLKQPQH QTSSSMSNAF DQNRSNILTV 360 EQTMSSTSYA INKSSSSSSS SSNNNNVEVR LMGSEAVVRV QCRDENYPSA RLLNVLRDLG 420 LQVHHASLSS VNDLMLQDVI VRVPHGTALR EKTLKTAILQ RLE
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 2e-24 | 277 | 341 | 6 | 70 | Transcription factor MYC2 |
5gnj_B | 2e-24 | 277 | 341 | 6 | 70 | Transcription factor MYC2 |
5gnj_E | 2e-24 | 277 | 341 | 6 | 70 | Transcription factor MYC2 |
5gnj_F | 2e-24 | 277 | 341 | 6 | 70 | Transcription factor MYC2 |
5gnj_G | 2e-24 | 277 | 341 | 6 | 70 | Transcription factor MYC2 |
5gnj_I | 2e-24 | 277 | 341 | 6 | 70 | Transcription factor MYC2 |
5gnj_M | 2e-24 | 277 | 341 | 6 | 70 | Transcription factor MYC2 |
5gnj_N | 2e-24 | 277 | 341 | 6 | 70 | Transcription factor MYC2 |
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