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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla008825 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | HSF | ||||||||
Protein Properties | Length: 519aa MW: 56986.5 Da PI: 4.8466 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.4 | 7.5e-36 | 36 | 127 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i Cla008825 36 FLSKTYDMVDDPATDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSIT 123 9********************999*****************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Cla008825 124 RRKP 127 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.3E-40 | 29 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.5E-64 | 32 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.94E-36 | 32 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.0E-32 | 36 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-20 | 36 | 59 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-20 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 75 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-20 | 87 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MEGTANGGDA GLASGSVNSQ PTVPAPITNS NAPPPFLSKT YDMVDDPATD AVVSWSPTNN 60 SFVVWNPPEF ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK 120 SITRRKPVHG HSQQQPQQSH GQSSSVGACV EVGKFGLEEE VERLKRDKNV LMQELVRLRQ 180 QQQTTDNQLQ TMVQRLQGME QRQQQMMSFL AKAVQSPGFL AQFVQQQNES TRRISEANKK 240 RRLKQDGIAE SEHSTVPDGQ IVKYQPLMNE AAKTMLRQIL KIDTSRLEPL NHNTDSFLIS 300 DGLQSSCAAV DNGNSSSSVS GVTLQEVPPT SSFNSAASGV APHGPSTAKS EMQSSPQATN 360 SDKVSTAPFS VNAVRGPGAR EASPLSVSET DVIMPELSHI SDMVPENIID VPEVDYRVPE 420 AVNGAFISPS FLDANGTIPI EIDNISPDAD IDALLDNSNF WDDLLVQSPC QDEEVDFMVG 480 GGLPKTNDVQ PVENAWDKSK HVDKLTEQMG LLTSEIKRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-28 | 10 | 125 | 5 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-28 | 10 | 125 | 5 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-28 | 10 | 125 | 5 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 244 | NKKRRLKQ |
2 | 238 | 243 | KKRRLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 0.0 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022923481.1 | 0.0 | heat shock factor protein HSF8-like | ||||
Swissprot | Q40152 | 0.0 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | A0A1S3BL38 | 0.0 | A0A1S3BL38_CUCME; heat shock factor protein HSF8-like | ||||
STRING | XP_008448660.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1843 | 31 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-134 | heat shock transcription factor A1D |
Publications ? help Back to Top | |||
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