PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008739
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 881aa    MW: 96334.9 Da    PI: 6.3536
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008739genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-182583357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cla008739 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLVRECpilsNIEPKQIKVWFQNRRCREKQ 83
               56789****************************************************97 PP
2START137.21.7e-431653662205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++ g a+ra+g        l +e+l+d++ W +++++ e+      g  g+++l +++ +
  Cla008739 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACG--------LIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVYTQVY 256
                7899********************************999999999999998........5667777888***********999999999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l+++ ++++lr+l++s+ + ++k+
  Cla008739 257 APTTLAPaRDFWTLRYTITLENGSLVVCERSLSGSGAGPSaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKM 356
                *********************************99999988999******************************************************** PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                + a+l++ ++
  Cla008739 357 TIAALRYVRQ 366
                *****98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5642084IPR001356Homeobox domain
SuperFamilySSF466898.55E-172287IPR009057Homeodomain-like
SMARTSM003893.2E-162288IPR001356Homeobox domain
CDDcd000862.54E-162585No hitNo description
PfamPF000463.2E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-182783IPR009057Homeodomain-like
CDDcd146868.64E-677116No hitNo description
PROSITE profilePS5084824.383155376IPR002913START domain
SMARTSM002346.6E-34164367IPR002913START domain
SuperFamilySSF559612.2E-30164369No hitNo description
PfamPF018524.8E-41165366IPR002913START domain
Gene3DG3DSA:3.30.530.203.3E-16197359IPR023393START-like domain
PfamPF086707.2E-40720843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MAMAIAHHRE SSSGSITRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLVRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLNAM NKLLMEENDR LQKQVSQLVC  120
ENGFMRQQLQ TVPAAATTDA SCDSVVTTPQ PSRRDANNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQSCGGVA ARACGLIAEI LKDRPSWFRD CRSLEVFTMF  240
PAGNGGTIEL VYTQVYAPTT LAPARDFWTL RYTITLENGS LVVCERSLSG SGAGPSAAAA  300
AQFVRAEMLP SGYLIRPCEG GGSIIHIVDH LNLEAWNVPE VLRPLYESSK VVAQKMTIAA  360
LRYVRQIAQE TSGEVVYGLG RQPAVLRTFS QRLSRGFNDA VNGFNDNGWS LINCEGAEDV  420
VLTVNSTKNF GTTSNPANSL TYPGGVLCAK ASMLLQNVPP AVLVRFLREH RSEWADFNID  480
AYSAATLKAN SYAYPGMRPT RFTGSQIIMP LGHTIEHEEL LEVIRLEGHP MVQEDAFVSR  540
DIHLLQICSG IDENAVGACS ELIFAPIDEM FPDDAPLLPS GFRIIPLDSR TVEYNCFVWI  600
CCSFPYSISG KILDVNIIIL ASDAKGSQRT LDLTSSLEVG SGTSNTAGDA SSSQSARSVL  660
TIAFQFPFES SMQDNVANMA HQYVRSVISS VQRVAMAISP SGGSPALGPK LSPGSPEALT  720
LAHWICKSYS LQLGTELIKS DSLESDSLLK NLWNHQDAIL CCSLKQSLPV FLFANQAGLD  780
MLETTLVALQ DITLDKIFDE SGRKALCADF PKLMQQGFAY LPGGICASTM GRHVSYEQAV  840
AWKPSSLAVL VLIHWSRSRR NEDEDKDVCS SMSNAMPPSP K
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656996.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA isoform X1
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A1S3CKV60.0A0A1S3CKV6_CUCME; homeobox-leucine zipper protein REVOLUTA isoform X1
STRINGXP_008463945.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]