PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008736
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARF
Protein Properties Length: 714aa    MW: 78811.3 Da    PI: 8.5234
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008736genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.1e-23112213199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +  ++++ l+
  Cla008736 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR--SKNGDLC 207
                89****************************997556555..8************************************************4..478888* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  Cla008736 208 VGIRRA 213
                ***996 PP
2Auxin_resp117.61.1e-38281364183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa  a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
   Cla008736 281 AAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 364
                 678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-37104216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-28107216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-21111212No hitNo description
PROSITE profilePS5086313.07112214IPR003340B3 DNA binding domain
SMARTSM010192.7E-22112214IPR003340B3 DNA binding domain
PfamPF023627.8E-22112213IPR003340B3 DNA binding domain
PfamPF065071.4E-33281364IPR010525Auxin response factor
PROSITE profilePS5174518.743602682IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MKEAEKNLDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQATVDFTSS LRIPPLIPCR  60
VLAVKFLADH ETDEVFANIR MVPLANNDLN FEEEGGFGSN GSENNMEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR SKNGDLCVGI RRAKRAIGCA ADHPYGWNPG GGNCIPPYGG  240
LTMFLRDEDN KLSRKGSLSS SGGSGNLRGK GKVRPESVME AAALAASGQP FEVVYYPRAS  300
TPEFCVKASS VRAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPIRWPNSPW  360
RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIQLSPFSP PRKKFRLPQH PDFPLDTQFP  420
LSSFSSNTLR PSSPMCCLSD NTSVGIQGAR HTQFGISLSD FHLNKLQLGL VPSSFQQLDF  480
HSRISNRSVT DHRDSSSQNS SALLNGEKTG PKLERSDSVK KHQFLLFGQP ILTEQQITCS  540
SSGDIRSPQT DKGSLDVNLE RVKFLSDGAG STFKQQISPN KSPGVGFPWY QGYQATELGL  600
DIGHCKVFME SEDVGRTLNL SVIGSYEELY RRLANMFGME KPDILSHVLY QDATGAVKQA  660
GDKPFSDFIK TARRLTILTD SGSDKLGRTM MDGMRSGENG LDASNKTGPL SIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-76838551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8433420.0KC843342.1 Cucumis sativus auxin response factor 10a (ARF10a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463952.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3CLX80.0A0A1S3CLX8_CUCME; Auxin response factor
STRINGXP_008463952.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]