PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 299aa MW: 33144.2 Da PI: 7.0908

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008697	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00068	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Cla008697 127 YECKTCNRTFPSFQALGGHRASH 149 99**********99999998887 PP
2	zf-C2H2	13.8	0.00018	198	220	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Cla008697 198 HECSICGLEFTSGQALGGHMRRH 220 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.63E-6	125	155	No hit	No description
Pfam	PF13912	2.7E-13	126	151	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	127	149	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.843	127	154	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	129	149	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.59E-6	194	222	No hit	No description
Pfam	PF13912	4.7E-12	197	222	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.015	198	220	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.785	198	225	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	200	220	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
METPEEFVGS NDQIHNIVAV KGRRNKRLRL LSSGPDATSS SSCGGADDFP AASSSISGDT 60 NNLVIDDDHH EISTEEEEDM ANCLILLAQG DSHRRPRQIL QDPLKIDKIT AKRLNFQMSK 120 TTGFYVYECK TCNRTFPSFQ ALGGHRASHK KPKPIAAVPT VEESEEPQLI KIATPPIQIP 180 TKAVIRTNFQ IQKGGKVHEC SICGLEFTSG QALGGHMRRH RATTTVSGAQ QVIVATNTEH 240 NHHHHHRNSS GDQRKERNIL ELDLNLPAPE EDLRETKFQF TATPQTIVFS APTLVDCHY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466979.1	1e-132	PREDICTED: zinc finger protein ZAT5-like
Swissprot	Q681X4	1e-55	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A1S3CSG9	1e-130	A0A1S3CSG9_CUCME; zinc finger protein ZAT5-like
STRING	XP_008466979.1	1e-131	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	7e-59	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]