PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008574

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

SRS

Protein Properties

Length: 322aa MW: 33040.3 Da PI: 8.3346

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008574	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.6	1.3e-67	105	259	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 s t++CqdCGnqakkdC+h+RCRtCC+srgfdCathvkstWvpaa+rrerq ++ +a++ a +s +++ +k++r +++++s+t++s+++++++l+t Cla008574 105 SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLI---ASQTTSHTSTSNTTPPRSLDT 201 6789********************************************99999999999998899999999986...667788899999999999999 PP DUF702 103 ss.......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ss lP++v+++avf+cvrv++vddg++e+aYq++v+igGhvfkG+LydqG+e Cla008574 202 SSnagfkeaLPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVE 259 9999**************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-62	107	259	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.7E-26	109	151	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.9E-29	211	258	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MSDPHSLAVS NPATALGVGV GVGVIPLLTA GPCLGVEEDN LLGNRSSSRG GGIQLWQQNQ 60 QSSQHYLKKT ASSSLDHHLH NASATNNELI GGGIGGSSGL ASSTSATTTC QDCGNQAKKD 120 CSHRRCRTCC RSRGFDCATH VKSTWVPAAR RRERQLMAVT ATAAAGSSGS TSGAKKPRLI 180 ASQTTSHTST SNTTPPRSLD TSSNAGFKEA LPSQVQARAV FKCVRVTAVD DGDDEYAYQA 240 VVKIGGHVFK GFLYDQGVEA GDGFPNVSEL HLGDGGGGSR NNRNGSSSSP LVDPSDVYNA 300 AASGGGGVPG FLAGSNYGNQ IS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	1e-105	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	1e-105	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023512287.1	1e-175	protein LATERAL ROOT PRIMORDIUM 1-like, partial
Swissprot	Q94CK9	1e-82	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1S3BMJ0	1e-147	A0A1S3BMJ0_CUCME; protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
STRING	XP_008449658.1	1e-148	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-56	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]