PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008574
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family SRS
Protein Properties Length: 322aa    MW: 33040.3 Da    PI: 8.3346
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008574genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.61.3e-671052593153
     DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102
                s t++CqdCGnqakkdC+h+RCRtCC+srgfdCathvkstWvpaa+rrerq ++ +a++ a +s +++ +k++r     +++++s+t++s+++++++l+t
  Cla008574 105 SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLI---ASQTTSHTSTSNTTPPRSLDT 201
                6789**********************************************99999999999998899999999986...667788899999999999999 PP

     DUF702 103 ss.......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                ss       lP++v+++avf+cvrv++vddg++e+aYq++v+igGhvfkG+LydqG+e
  Cla008574 202 SSnagfkeaLPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVE 259
                9999****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.8E-62107259IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.7E-26109151IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.9E-29211258IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSDPHSLAVS NPATALGVGV GVGVIPLLTA GPCLGVEEDN LLGNRSSSRG GGIQLWQQNQ  60
QSSQHYLKKT ASSSLDHHLH NASATNNELI GGGIGGSSGL ASSTSATTTC QDCGNQAKKD  120
CSHRRCRTCC RSRGFDCATH VKSTWVPAAR RRERQLMAVT ATAAAGSSGS TSGAKKPRLI  180
ASQTTSHTST SNTTPPRSLD TSSNAGFKEA LPSQVQARAV FKCVRVTAVD DGDDEYAYQA  240
VVKIGGHVFK GFLYDQGVEA GDGFPNVSEL HLGDGGGGSR NNRNGSSSSP LVDPSDVYNA  300
AASGGGGVPG FLAGSNYGNQ IS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-105LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-105LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023512287.11e-175protein LATERAL ROOT PRIMORDIUM 1-like, partial
SwissprotQ94CK91e-82LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1S3BMJ01e-147A0A1S3BMJ0_CUCME; protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
STRINGXP_008449658.11e-148(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-56Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]