PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008544
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 328aa    MW: 36264.6 Da    PI: 6.3978
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008544genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.5e-142572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l  +    G g+W+ +ar  g+ R++k+c++rw +yl
        Cla008544 25 KGLWSPEEDDKLMSYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 72
                     678*******************************************97 PP
2Myb_DNA-binding50.26e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l+++++ +lG++ W+ Ia++++ gRt++++k++w++
        Cla008544  78 RGAFSPQEEHLIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 121
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9642072IPR017930Myb domain
SuperFamilySSF466891.29E-2722119IPR009057Homeodomain-like
SMARTSM007172.4E-92474IPR001005SANT/Myb domain
PfamPF002494.5E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-222679IPR009057Homeodomain-like
CDDcd001675.21E-82872No hitNo description
PROSITE profilePS5129425.23773127IPR017930Myb domain
SMARTSM007173.0E-1477125IPR001005SANT/Myb domain
PfamPF002494.6E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2580128IPR009057Homeodomain-like
CDDcd001674.36E-1080120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRKPEASGGS SATTTKTTTT MKLRKGLWSP EEDDKLMSYM LNNGQGCWSD VARNAGLQRC  60
GKSCRLRWIN YLRPDLKRGA FSPQEEHLII HLHSLLGNRW SQIAARLPGR TDNEIKNFWN  120
STIKKRLKNL SSSPSPNTSS AGSPSADSKP NLFGNLLSAQ DQQQPQGLMD DFPIYAPDPT  180
PSVIAIDPFP FLATHGGPFF PATTPTFTTG VEPGYFQEDE SFFSNLPLLQ SVNATTTTVA  240
TTAVAIAERS LKTETVVKEA NHSNYLINNI NCLANHNNIS NNNPKNDNTI NAEVGANFLH  300
EEFSIGEWDL EDLMKDVPSY PCLNFQVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27231275108B-MYB
1h8a_C1e-262312725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142224.11e-156PREDICTED: transcription factor MYB82-like
TrEMBLA0A1S3BNB21e-153A0A1S3BNB2_CUCME; transcription factor MYB46
STRINGXP_004162103.11e-155(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-64myb domain protein 46