PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008525
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 672aa    MW: 76028.8 Da    PI: 9.4384
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008525genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.9e-101063248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                     ++W t E++ll+ av+++G+ +W+++a ++          +t+ +c++++++++
        Cla008525 10 KPWGTLEELLLASAVNRHGTTSWDSVAMEIHnrcsqspSSLTPQDCRNKFYDLK 63
                     58************************************99**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.679463IPR017877Myb-like domain
SuperFamilySSF466893.12E-6767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-6865IPR009057Homeodomain-like
SMARTSM007175.0E-7865IPR001005SANT/Myb domain
PfamPF002491.2E-91063IPR001005SANT/Myb domain
CDDcd001678.71E-61163No hitNo description
SuperFamilySSF473702.35E-16305422IPR001487Bromodomain
SMARTSM002978.8E-16313422IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.0E-13315421IPR001487Bromodomain
CDDcd043692.48E-15324417No hitNo description
PfamPF004391.6E-9327402IPR001487Bromodomain
PROSITE profilePS5001410.967332403IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MVNQRETNAK PWGTLEELLL ASAVNRHGTT SWDSVAMEIH NRCSQSPSSL TPQDCRNKFY  60
DLKRRFLSQN LLDSDSTSLM PMLDELRKIR VEELRRDVQR RDVLIVSLEM KVKRLEEERD  120
RSFNQPHAEP DLDIDIAKTN LRPASGDDSD DRENRSLNES NSTSTTDDVP QNDVVKENPI  180
NESVKISKIK ETGLPRTGDE PEREWSFNGA AAEPEPEPEP ELEREKNSVA GAGYKRREKE  240
RNWGDSKGSQ TAVGDSNEAW ESVSESKQEV KEGAVSKRQI SDVQSSGSLS QRNRCRNRGG  300
SSSGEEPEVC PAKPKPSAVK SEPLLKFLEI IRSHRLGSAF ERRLRSQESD RYKQLIRQHI  360
DLRTIRCRVV KGAYADSIHR FFRDLLLLFN NAIIFFHRSS PENGAALKLR ALVLKEMKDK  420
IGNPQPILLK SKPKQEADLS SSKPTTKPST TIVGCRKRDA VAMVSSDVGC KKADKNSRDV  480
EGKPKLCDSS EIKIYEKGTW KKGLNSKEKP RPAPANSGPR TSRTSTSKNN GEVKHEYGGN  540
ELSSHDRMEV QMEKKERVAK KKQGAVSFLK RMKQNSPSEA GDEDGDASED ESSKEEEKEE  600
EEEGEEEEEE EEEEKRKVKK QNEGKRERVR RSSGGRGKRG VGRPPKKTET VTVKRQQKEE  660
VSSGKPQKRS RR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449745.10.0PREDICTED: transcriptional regulator ATRX-like
TrEMBLA0A1S3BNE20.0A0A1S3BNE2_CUCME; transcriptional regulator ATRX-like
STRINGXP_008449745.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-58DNA-binding bromodomain-containing protein