PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008339
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 336aa    MW: 37614.3 Da    PI: 4.4126
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008339genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-19102155356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Cla008339 102 KKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 155
                56689************************************************9 PP
2HD-ZIP_I/II130.18.5e-42101191191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ +qv++LE+sFe+e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y +lk + e+L ke+++L++e+
    Cla008339 101 EKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKEKDSLKAEI 191
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-1985159IPR009057Homeodomain-like
PROSITE profilePS5007117.26597157IPR001356Homeobox domain
SMARTSM003893.2E-19100161IPR001356Homeobox domain
PfamPF000461.5E-16102155IPR001356Homeobox domain
CDDcd000863.97E-18102158No hitNo description
Gene3DG3DSA:1.10.10.601.5E-19104164IPR009057Homeodomain-like
PRINTSPR000319.8E-6128137IPR000047Helix-turn-helix motif
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PRINTSPR000319.8E-6137153IPR000047Helix-turn-helix motif
PfamPF021837.7E-14157198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGRRVYGGG GCDDGGSISG VSSNHSVLLQ NRGGSFASEP LNALFLSGSS SSTSPSLLGS  60
RSMMSFEDIR GGNGSNRSFF CPFDSEDNGD EDLDDYFHHP EKKRRLTVDQ VRFLEKSFET  120
ENKLEPERKV QLAKDLGLQP RQVAIWFQNR RARWKTKQLE KDYEALQSSY GSLKVDYENL  180
LKEKDSLKAE ILLLTDQLLH KEKERGNSVL SEVDKFGEEP PNNLVADSHL EDEVSKSSKL  240
GCKQEDISSV KSDIFDSDSP HYTDGVHSSL LEPGDSSYIF DPDQSDLSQD EEDNLGKNLL  300
PPYIFPKLED VDYSDPPTSS CNFVFPIEDN ALWSWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARWKTKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152444.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBLA0A0A0LTZ60.0A0A0A0LTZ6_CUCSA; Uncharacterized protein
STRINGXP_004152443.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-44homeobox 1