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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla008281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | C2H2 | ||||||||
Protein Properties | Length: 137aa MW: 14972.2 Da PI: 9.1322 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00051 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Cla008281 29 FVCKTCNREFSSFQALGGHRASH 51 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00076 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H Cla008281 69 HECPICGLDFPIGQALGGHMRRH 91 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.51E-9 | 27 | 91 | No hit | No description |
Pfam | PF13912 | 3.0E-12 | 28 | 53 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 29 | 51 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-9 | 68 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.517 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.33 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MVDCLMLLSK VEEPWRKNNS PAADSGKVFV CKTCNREFSS FQALGGHRAS HKKPNFKDAN 60 GPPTKPKAHE CPICGLDFPI GQALGGHMRR HRTTAAAATV EKSDGYGKKG FGLDLNLTPV 120 ENNLKLQLTT PFVDCFN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681926 | 1e-117 | LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044. | |||
GenBank | LN713266 | 1e-117 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457541.1 | 2e-82 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 6e-35 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A1S3C722 | 4e-81 | A0A1S3C722_CUCME; zinc finger protein ZAT12-like | ||||
STRING | XP_008457541.1 | 7e-82 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 7e-36 | C2H2 family protein |