PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008229
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 675aa    MW: 75048.1 Da    PI: 9.0266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008229genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07576625147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
        Cla008229 576 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 625
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.96E-7379466IPR029071Ubiquitin-related domain
PROSITE profilePS500539.156385455IPR000626Ubiquitin domain
PROSITE profilePS5129415.565571630IPR017930Myb domain
SMARTSM007172.0E-7575628IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10576626IPR009057Homeodomain-like
SuperFamilySSF466891.11E-15577658IPR009057Homeodomain-like
CDDcd116601.59E-16577627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MVLQKRLDYG FHGYQVPTMP RATRSARKRS LCRKGTEGSQ MRAFDLLATV ADKLLHGTDG  60
PTTTTTDTST EKDRHAIMNK ELDADSLLKV EPSDQGSCDQ GFISEIVLSG RDKKCDTNDC  120
LPQHDEHSPQ LVSVVTNFEK SKKEVENLAS EIHLGSPSSK ESDNCELDGN KRKVTVKYEL  180
HKTEEVLTGT QNQDDSCKRE DPVIWDQKAH LLGNNSDSCG KMTQDKQIVQ DSSFATQNNV  240
KVVDRDDDEN SSGCTHPVSA IKSFRTVPSS RDRRIRKVSA SKSWKLVPRY RDESLSKSDG  300
SWKSMFRSKS SHDSCRRQKS QMNIPFKKRK FFDCSSSVSN SDGGINSEGL SDSTGKVVNT  360
DNSGRSCSAS GHGHHKSFPS KDSHVKIRIK SFRVPELFIE IAETATVGSL KRTVMEAVTA  420
ILGGGLRVGV LLQGKKVRDD NKTLFQTGIS HDNQLDSLGF ALEPNPSQTP LVLGQEDSPC  480
ILPCDAPERL TRYSRNASAD HPGSSNVLSE PHGDSLGNFI ESDHDSAPSP TDTSNHKSTT  540
DSKALVTVPA MTVEALTVVP MHRKSKRSEV AQRRIRRPFS VAEVEALVQA VEKLGTGRWR  600
DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSKQQ  660
AKYQLKRQPE TCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-565606621103Telomere binding protein TBP1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457466.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_008457467.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A1S3C5570.0A0A1S3C557_CUCME; telomere repeat-binding protein 5-like
STRINGXP_008457466.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-135TRF-like 2