PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008216
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 192aa    MW: 21147.7 Da    PI: 5.9428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008216genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000112749123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C++ F++   L  H++ H
  Cla008216 27 YECNFCKRGFTNAQALGGHMNIH 49
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-72554No hitNo description
Gene3DG3DSA:3.30.160.604.8E-62553IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.032754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEIDQQDASC EYQEEETGVK QSAARSYECN FCKRGFTNAQ ALGGHMNIHR KEKAKLKQSI  60
SSPSLSSSPN KIVVDTPKMI LMTTPTRLPW LVSPSTGEGH GRSGRGGREE TLISEEVQQQ  120
LPLFVENPSN MDQINLEIHQ VLPTELASDP KLGSSFRHGS SVSELDLELR LGPEPQNSAP  180
SSLPTGRTTH FF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145329.15e-95PREDICTED: transcriptional regulator TAC1-like
RefseqXP_008457447.15e-95PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A0A0LXG21e-93A0A0A0LXG2_CUCSA; Uncharacterized protein
TrEMBLA0A1S3C6791e-93A0A1S3C679_CUCME; transcriptional regulator TAC1-like
STRINGXP_008457447.12e-94(Cucumis melo)
STRINGXP_004145329.12e-94(Cucumis sativus)
STRINGXP_004153148.12e-94(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-16C2H2 family protein