PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008097
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 871aa    MW: 96439.7 Da    PI: 7.2458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008097genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.8e-19336435198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++lv+++
  Cla008097 336 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPVRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTVTFSRID-PGGQLVMGF 433
                99**************************555556677***************9989999999***9.********************887.777777777 PP

                E- CS
         B3  97 fr 98 
                ++
  Cla008097 434 RK 435
                65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-29332440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-20333437IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-23334435No hitNo description
SMARTSM010196.2E-22336436IPR003340B3 DNA binding domain
PROSITE profilePS5086311.011336437IPR003340B3 DNA binding domain
PfamPF023623.7E-16336435IPR003340B3 DNA binding domain
PROSITE profilePS5105014.191574624IPR011124Zinc finger, CW-type
PfamPF074961.7E-9579621IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MAASNRCMNT SCRAAIPHDW TKGWPLGSAG YAHLCLNCGS AYENLVFCDT YHLEETGWRD  60
CSFCGKRIHC GCIASKSMFE CLDYGGIGCT SCVKRSRLGV IRRDEISNGF DAVTVGNVGF  120
LPPTSVEDQV VRNGINEEKL LQLCNIMEAN EPNHFQQSQR VDRSASPAQN RGENLRSPFG  180
EVRSSFFNMN KLPVKCQPSV GSLTYSKLDT SRPHLELKDM KESLSQPSLN ITLGVPLGTP  240
NFVVPFSGSA AEEDEKSILP FQQGQRSRPI FPKLIKTGTA VNSEARKGMA PLVRIARPPA  300
EGRGKNQLLP RYWPRITDQE LEQLSGDLNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA  360
YFPPISQSEG LPVRIQDVKG NEWTFQFRFW PNNNSRMYVL EGVTPCIQSM QLRAGDTVTF  420
SRIDPGGQLV MGFRKATNST DIQDAKIPTL SNGSHSGDAS FSGVFQNLPL RAEGETSLRK  480
SENSGGRTND ASGQQPVLTI EKKGARNIGS KNKRLLMHSE DALELRLTWE EAQDLLRPPP  540
SANPTIVTID DHEFEEYDEP PVFGKRTIFT VRPTGEQKQW AQCDDCSKWR RLPVDVLLPP  600
KWSCPDNVWD LSRCTCSAPE EISTKEQDNL LRASKDFKKR KIMKSQKSIQ ELEPSGLDAL  660
ASAAVLGDSM ADLQESGTTT RHPRHRPGCT CIVCIQPPSG KGKHKSTCTC NVCLTVKRRF  720
KTLMLRKKKR QSEREVETLL KDRNPQFDET GTGGTLRGTS LQTNYLENEG SQSRIKDEEA  780
ANSSGQIDLN CHPDREDMEL EGAGLSMMSL VEAASQPLDS YSKQIGISSV TSEQQSSQPS  840
SVESERRLSE ELCHGSGHES TSDGCREHHR D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-713144432131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1716727KRRFKTLMLRKK
2716729KRRFKTLMLRKKKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649398.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1S3C5U60.0A0A1S3C5U6_CUCME; B3 domain-containing transcription repressor VAL1-like isoform X3
STRINGXP_008457289.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]