PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007823

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

M-type_MADS

Protein Properties

Length: 345aa MW: 40030.3 Da PI: 6.5109

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007823	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.6	3.2e-18	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+n+ r++tf kR++ +l KA+ELS+LCd++ +v +++++++ Cla007823 10 LINNEKSRKTTFYKRKASLLRKAYELSTLCDVRTCVFVYGPNQN 53 699**************************************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-16	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.909	1	51	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.84E-21	2	65	No hit	No description
SuperFamily	SSF55455	1.57E-20	2	100	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-16	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-9	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGRGKLSMKL INNEKSRKTT FYKRKASLLR KAYELSTLCD VRTCVFVYGP NQNDQSPLQL 60 HTWPSCREDI NEMIASYKAN CLHKRARKAF GLLDFFSERK KKIETDMSKL RKDVAEARFP 120 KWDERLDHLL EDQLRVLMVE LDSKLEMTKR RIETVTENVE EGTSVESSQT LNGNMKQKQI 180 MAFDEGEESY GMFGRSSMEQ TQAIMPFHHQ YHQLQTMAQS LQMDQELENL SPFLFGGNGS 240 SPQIQLSYGN TNCFQNYPHN FYNDPTINGM VMDNTQSYSM CHYGLPLTTQ SVLPLSYMQM 300 QLTDDQLMMA CASNSQMALP NNASTQVNDQ FDYFNYEYFI KPNNF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGRGKLSMKL INNEKSRKTT FYKRKASLLR KAYELSTLCD VRTCVFVYGP NQNDQSPLQL  60
HTWPSCREDI NEMIASYKAN CLHKRARKAF GLLDFFSERK KKIETDMSKL RKDVAEARFP  120
KWDERLDHLL EDQLRVLMVE LDSKLEMTKR RIETVTENVE EGTSVESSQT LNGNMKQKQI  180
MAFDEGEESY GMFGRSSMEQ TQAIMPFHHQ YHQLQTMAQS LQMDQELENL SPFLFGGNGS  240
SPQIQLSYGN TNCFQNYPHN FYNDPTINGM VMDNTQSYSM CHYGLPLTTQ SVLPLSYMQM  300
QLTDDQLMMA CASNSQMALP NNASTQVNDQ FDYFNYEYFI KPNNF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008460878.1	0.0	PREDICTED: MADS-box protein SOC1-like
TrEMBL	A0A1S3CDG6	0.0	A0A1S3CDG6_CUCME; MADS-box protein SOC1-like
STRING	XP_008460878.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	4e-22	M-type_MADS family protein