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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cla007815 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family |
MYB |
Protein Properties |
Length: 212aa MW: 23950.9 Da PI: 11.0878 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cla007815 | genome | ICuGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 27 | 72 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l ++v+q+G+ +W+ Ia+++ gR++k+c++rw++
Cla007815 27 RGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE-GRSGKSCRLRWYNQ 72
899*****************************.************96 PP
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2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
++++++eE+e+l+ +++G++ W++Iar++ gRt++ +k++++
Cla007815 79 KNPFSEEEEERLLMFQQLHGNK-WALIARHFK-GRTDNAVKNHYHV 122
689*******************.********9.***********86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 212 aa
Download sequence Send
to blast |
MMRSRSSSSS GGSSGGGGGS SGVSCYRGHW RPAEDNKLRQ LVEQFGPQNW NYIAEHFEGR 60 SGKSCRLRWY NQLDPNINKN PFSEEEEERL LMFQQLHGNK WALIARHFKG RTDNAVKNHY 120 HVIMARRRRE RFTIFTNHNN NNNNILRTRH SLLPFSKTTA VKWTPLTAAP PVVLGNGRGK 180 SSLPAVVASG SGETEDHKRR IPFIDFLGMG SS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | LN681912 | 1e-146 | LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059. |
GenBank | LN713265 | 1e-146 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |