PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007715
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 255aa    MW: 29455.9 Da    PI: 8.2663
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007715genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l+d+v+++G  +W++ +++ g+ R++k+c++rw +yl
        Cla007715 15 KGVWTPEEDQKLIDYVNKYGHWNWRRLPKYAGLLRCGKSCRLRWMNYL 62
                     799*****************99**********99************97 PP
2Myb_DNA-binding46.21e-1468113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE+e++++  +  Gg+ W+t a  m+ gRt++++k++w+++l
        Cla007715  68 RGGFSLEEEEIIIQMYAAIGGR-WSTMAGVMP-GRTDNDIKNHWNTVL 113
                      7889******************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.8011066IPR017930Myb domain
SuperFamilySSF466891.67E-2913109IPR009057Homeodomain-like
SMARTSM007175.1E-141464IPR001005SANT/Myb domain
PfamPF002491.2E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-241769IPR009057Homeodomain-like
CDDcd001671.64E-111862No hitNo description
PROSITE profilePS5129416.67467117IPR017930Myb domain
SMARTSM007177.6E-1367115IPR001005SANT/Myb domain
PfamPF002491.9E-1168113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2270117IPR009057Homeodomain-like
CDDcd001671.59E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAKCCCCCDE TKVKKGVWTP EEDQKLIDYV NKYGHWNWRR LPKYAGLLRC GKSCRLRWMN  60
YLRPNIRRGG FSLEEEEIII QMYAAIGGRW STMAGVMPGR TDNDIKNHWN TVLKRRVMKQ  120
QKKKKKMLTK MANKPPPPPP LPDVAEVSPI HEVFSGEILR SNNNQLISNN STLIIDPTAL  180
KSALIETVEM ATSRNMDMEP VDDRLRASFA GDFWTDPLWM DNSFDIPFDY QYQGFGESIN  240
SFHLGLDEYL LQEGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29151177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817922e-53LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132552e-53LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455366.11e-143PREDICTED: transcription factor WER-like
TrEMBLA0A1S3C0W11e-142A0A1S3C0W1_CUCME; transcription factor WER-like
STRINGXP_008455366.11e-143(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.16e-52myb domain protein 41