PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007697
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 321aa    MW: 35666.6 Da    PI: 6.4998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007697genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-09190232855
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+++ ++   L++llP++     kK++ a++Le+A++Y+k Lq
  Cla007697 190 LARQRRQKLSDKTRCLQKLLPWD-----KKMDIATMLEEACKYVKFLQ 232
                679*******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.179182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-9184235No hitNo description
SuperFamilySSF474591.02E-10185240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-10188239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-9188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-6190232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MESSAGDDAS STVWNDACFN AMFSGVSLQS FLAGGRQSHT LLPTLFGGGY IGDALTFPDG  60
ATSFYPQASS NFVAECTASS DGSFFKLPKS EPMNVYENTE TEETAFVLHD STPFPHLPDL  120
RSLEQCSSSF NKRARVDSML NPLQMVEPTV VREYDGFQNF FMPYQYKPSS DLITTSATVS  180
PTVQIPRSAL ARQRRQKLSD KTRCLQKLLP WDKKMDIATM LEEACKYVKF LQAQLLALQS  240
MPCESAISTY SSNHYITGVF GGLERLNRNQ LLQVLVNSPV AQTMLCSQNC CVFSAEQLGL  300
IQKIAEKRVL LQQMSTFRPK P
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023554551.10.0transcription factor bHLH117-like
TrEMBLA0A1S3C0Y60.0A0A1S3C0Y6_CUCME; transcription factor bHLH117
STRINGXP_008455394.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-20bHLH family protein