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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla007696 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GeBP | ||||||||
Protein Properties | Length: 407aa MW: 46340.8 Da PI: 5.047 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 122.6 | 1.9e-38 | 182 | 276 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++rlwse+Dei++LqG+idf+ +g++p+ d++ f +f+k+++s++vsk+ql++K+rrLKkK+k++++k ++g++p+f k+h++k+f lskkiWg Cla007696 182 INRLWSEDDEISILQGMIDFQLAKGSDPYTDMSLFLDFIKENLSVDVSKNQLIDKVRRLKKKYKNNSEKGRNGDDPVFLKQHEHKSFVLSKKIWG 276 68********************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.4E-33 | 183 | 276 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MAPKRLVEDL PSFHAFSDAE EESDYETHED PEIDNLMQNS EDENEEQTQE DDEEEEQEEQ 60 EQEQEHEQAI RSPIISKREN SLEKDSGFVS DSDSEKTQSS PSASAFTIKP IIRKLACGSS 120 KPKKDSHKSS IDCATVKPVS SGSKRPIENN FQGNESNKKK IKRGVMNGED IEEGKKVSGS 180 GINRLWSEDD EISILQGMID FQLAKGSDPY TDMSLFLDFI KENLSVDVSK NQLIDKVRRL 240 KKKYKNNSEK GRNGDDPVFL KQHEHKSFVL SKKIWGNEAK KKPRKQSVKA SNSVSISSPR 300 VDVEAGKKEI VNNNNVESKI LPEEFLSEYP WLKASFMVEN DKFCSEGLMR LVRERMPLIG 360 SEKAKELDDK WRKLGESELE LYVKKVDLVR EQCKLILDSM GKAKRAT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 0.0 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022969118.1 | 0.0 | STOREKEEPER protein-like | ||||
TrEMBL | A0A1S3C0T6 | 0.0 | A0A1S3C0T6_CUCME; mediator-associated protein 1-like | ||||
STRING | XP_008455395.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13966 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-29 | DNA-binding storekeeper protein-related transcriptional regulator |