PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007626
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 271aa    MW: 32043.2 Da    PI: 9.4204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007626genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-182471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+ +G g+W+++a+  g++R +k+c++rw +yl
        Cla007626 24 KGPWTAEEDRLLIEYVRVHGEGRWNSVAHLAGLRRNGKSCRLRWVNYL 71
                     79********************************************97 PP
2Myb_DNA-binding51.71.9e-1677121147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
        Cla007626  77 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 121
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8811975IPR017930Myb domain
SuperFamilySSF466893.05E-3021118IPR009057Homeodomain-like
SMARTSM007172.4E-162373IPR001005SANT/Myb domain
PfamPF002492.6E-172471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-242578IPR009057Homeodomain-like
CDDcd001679.31E-122671No hitNo description
SMARTSM007171.4E-1476124IPR001005SANT/Myb domain
PROSITE profilePS5129419.3576126IPR017930Myb domain
PfamPF002491.1E-1377121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2479125IPR009057Homeodomain-like
CDDcd001676.11E-1081122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MMMMMMMMGD HFGWAKVAAE GWRKGPWTAE EDRLLIEYVR VHGEGRWNSV AHLAGLRRNG  60
KSCRLRWVNY LRPDLKRGQI TPHEESIILE LHARWGNRWS TIARSLPGRT DNEIKNYWRT  120
HFKKKAKVTS NCNEKPNTRF LRKHQYHQQQ QQQQQYWELL RQQQQHQHRE LLRQQQQLNQ  180
QPDMKAEPIN NSQPQIRQES CTGMISNFNP QITDDHDQPG GLLLSLPEAI SMEDHQLWDG  240
LLWNFEDFHG NLTPNSAFGK ANVNNLVTPY C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-281412617128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818440.0LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460699.11e-161PREDICTED: myb-related protein 305-like
TrEMBLA0A1S3CE841e-159A0A1S3CE84_CUCME; myb-related protein 305-like
STRINGXP_008460699.11e-160(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.12e-74myb domain protein 79