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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cla007368 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family |
SRS |
Protein Properties |
Length: 377aa MW: 38347.9 Da PI: 9.2487 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cla007368 | genome | ICuGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 195.6 | 1.6e-60 | 160 | 326 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskkel 100
sg+ +C+dCGnqakkdC+h+RCR CCksrgfdC+thvkstWvpaa+rrerq a+++ a ++ +++ k++r ++++++ s+t++s++ ++ ++
Cla007368 160 SGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGGASEAAAGGTSsgSTSGGKKPRLI-ASQTTTNSHTSTSNTPTP-SF 257
56779*********************************************9988887777766663355555566654.444444445555544433.55 PP
DUF702 101 etss...........lPeevsseavfrcvrvssvdd....geeelaYqtavsigGhvfkGiLydqGlee 154
++ss lPe+++++avf+cvrv++v+ g +e+aYq++v+igGh+fkG+Lyd+G+e+
Cla007368 258 DASSaadmsskkakkLPEQIRAPAVFKCVRVTAVEGgsggGGNEYAYQAVVKIGGHIFKGYLYDHGVEA 326
555556677789999*******************9843335689**********************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 377 aa
Download sequence Send
to blast |
MGQFLSRYGD QKRKINLGFF FFFAGDLPAV AAARRLPSDS GAFADWVAPP SAIVADELSL 60 GFNSAATVPP ARMWPSSRPL AVGYGHTAAP APDMVGLMAS GFGVGVSVLP LLTGLAPSSV 120 GIEEANLMIS RGSSSGGVQF NGNNLDGFGI LGGGSSSLNS GAGTCHDCGN QAKKDCSHRR 180 CRSCCKSRGF DCSTHVKSTW VPAARRRERQ MLGGASEAAA GGTSSGSTSG GKKPRLIASQ 240 TTTNSHTSTS NTPTPSFDAS SAADMSSKKA KKLPEQIRAP AVFKCVRVTA VEGGSGGGGN 300 EYAYQAVVKI GGHIFKGYLY DHGVEAARDG FPTLSNLHLG DGGSASSPVI DPADVYGSSA 360 ARGGGLAGGS GYGNPIN
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G12330.4 | 5e-47 | Lateral root primordium (LRP) protein-related |