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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla007368 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | SRS | ||||||||
Protein Properties | Length: 377aa MW: 38347.9 Da PI: 9.2487 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 195.6 | 1.6e-60 | 160 | 326 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskkel 100 sg+ +C+dCGnqakkdC+h+RCR CCksrgfdC+thvkstWvpaa+rrerq a+++ a ++ +++ k++r ++++++ s+t++s++ ++ ++ Cla007368 160 SGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGGASEAAAGGTSsgSTSGGKKPRLI-ASQTTTNSHTSTSNTPTP-SF 257 56779*********************************************9988887777766663355555566654.444444445555544433.55 PP DUF702 101 etss...........lPeevsseavfrcvrvssvdd....geeelaYqtavsigGhvfkGiLydqGlee 154 ++ss lPe+++++avf+cvrv++v+ g +e+aYq++v+igGh+fkG+Lyd+G+e+ Cla007368 258 DASSaadmsskkakkLPEQIRAPAVFKCVRVTAVEGgsggGGNEYAYQAVVKIGGHIFKGYLYDHGVEA 326 555556677789999*******************9843335689**********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.2E-56 | 164 | 325 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.5E-25 | 164 | 206 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.7E-24 | 273 | 324 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGQFLSRYGD QKRKINLGFF FFFAGDLPAV AAARRLPSDS GAFADWVAPP SAIVADELSL 60 GFNSAATVPP ARMWPSSRPL AVGYGHTAAP APDMVGLMAS GFGVGVSVLP LLTGLAPSSV 120 GIEEANLMIS RGSSSGGVQF NGNNLDGFGI LGGGSSSLNS GAGTCHDCGN QAKKDCSHRR 180 CRSCCKSRGF DCSTHVKSTW VPAARRRERQ MLGGASEAAA GGTSSGSTSG GKKPRLIASQ 240 TTTNSHTSTS NTPTPSFDAS SAADMSSKKA KKLPEQIRAP AVFKCVRVTA VEGGSGGGGN 300 EYAYQAVVKI GGHIFKGYLY DHGVEAARDG FPTLSNLHLG DGGSASSPVI DPADVYGSSA 360 ARGGGLAGGS GYGNPIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011660164.1 | 1e-164 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 2e-67 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A0A0M099 | 1e-163 | A0A0A0M099_CUCSA; Transcription factor | ||||
STRING | XP_004154692.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24559 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 5e-47 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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