PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007117

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

M-type_MADS

Protein Properties

Length: 268aa MW: 31173.6 Da PI: 5.154

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007117	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55.5	7.1e-18	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n r +tf kR++ ++KKA+ELS+LCda+ +v i+s Cla007117 11 IPNLKSRRTTFLKRKKSLMKKAYELSTLCDAQTCVFIASD 50 778889*******************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.4E-17	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.6	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.59E-18	1	76	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.05E-19	2	68	No hit	No description
PRINTS	PR00404	3.2E-12	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-15	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-12	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-12	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MGRGILSLKL IPNLKSRRTT FLKRKKSLMK KAYELSTLCD AQTCVFIASD CDPAAQFETW 60 PPNRDQIHTM IRSYKSHXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXSYKSPSFL KQSRNSSYDL NRFLSDRKNK IVTDTAKLRH NVDKFKDHNL 180 DSLSEDQLKD FLATLDSKIG VVDDMIQFME ADYDYLIEEV IGTPSFCPFE TEESCEYNVE 240 DFQSLLEDEF LGALVQNHPF NFDSELIA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004145650.1	6e-42	PREDICTED: agamous-like MADS-box protein AGL3
TrEMBL	A0A0A0LAL9	1e-40	A0A0A0LAL9_CUCSA; Uncharacterized protein
STRING	XP_004145650.1	2e-41	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31110	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	6e-12	MIKC_MADS family protein