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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla006880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | CO-like | ||||||||
Protein Properties | Length: 404aa MW: 44060.1 Da PI: 5.0886 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.6 | 8e-06 | 34 | 77 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41 C+++++++ + C d + lC++C + H g H++++ Cla006880 34 LCERCHSQPSTVRCIDERLSLCQNCDWTVH-GtstlasssHKRQT 77 7**************************99*.54788888888765 PP | |||||||
2 | CCT | 60.7 | 4.9e-21 | 347 | 390 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a+lRYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk+ Cla006880 347 RNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAG 390 999**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00021 | 6.91E-4 | 2 | 34 | No hit | No description |
PROSITE profile | PS50119 | 8.56 | 30 | 78 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.92E-5 | 34 | 78 | No hit | No description |
Pfam | PF06203 | 6.2E-16 | 347 | 389 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.13 | 347 | 389 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MVYCRSDAAC LCLSCDRNVH SANALSRRHT RTLLCERCHS QPSTVRCIDE RLSLCQNCDW 60 TVHGTSTLAS SSHKRQTINC YSGCPSAAEL SSIWSFVLDV PSVNDACEKE LGLMSIAETD 120 LMGTWSLSEN NAGQRMPGST EASDVCSREK SNALVGSSSL IDFGSRPHTS DQPVEFANVA 180 LPKFCCPGTK VAEFCGEDDD LYKEFDMDEM DLNLENYEEL FSMSLNHSEE FFENGGIDSF 240 FEAKGLSFED SVCHSAVAAE GSSIGVVKPM QPACSNGASA DSVMSAKTEP VLCFNSRQAQ 300 SGVSFSGLTG ESSAGDHQDC GASSMLLMGE PPWCAPGAES SFPSSDRNSA VLRYKEKKKT 360 RKFEKTVRYA TRKARADVRR RVKGRFVKAG EAYDYDPLNQ ARSC |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681917 | 0.0 | LN681917.1 Cucumis melo genomic scaffold, anchoredscaffold00085. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139988.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X2 | ||||
Swissprot | Q9SSE5 | 1e-132 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A0A0KCQ6 | 0.0 | A0A0A0KCQ6_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3CLA3 | 0.0 | A0A1S3CLA3_CUCME; zinc finger protein CONSTANS-LIKE 9-like isoform X2 | ||||
STRING | XP_004154511.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-112 | CONSTANS-like 9 |