PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006761
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 308aa    MW: 32944.9 Da    PI: 8.2052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006761genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.1e-19954147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + 
        Cla006761  9 KGPWSPEEDDALQRLVHKYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 54
                     79******************************.***********985 PP
2Myb_DNA-binding543.9e-1763105347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a +++G++ W+tIar +  gRt++ +k++w++ 
        Cla006761  63 AFTPEEDETIINAQALYGNK-WATIARLLS-GRTDNAIKNHWNST 105
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.373459IPR017930Myb domain
SuperFamilySSF466891.29E-316102IPR009057Homeodomain-like
SMARTSM007171.4E-17857IPR001005SANT/Myb domain
PfamPF002493.4E-19954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-261062IPR009057Homeodomain-like
CDDcd001675.57E-171153No hitNo description
SMARTSM007172.7E-1460108IPR001005SANT/Myb domain
PROSITE profilePS5129421.23861110IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2263109IPR009057Homeodomain-like
CDDcd001677.48E-1263106No hitNo description
PfamPF002495.6E-1463105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAKEIDRIKG PWSPEEDDAL QRLVHKYGPR NWSLISKSIP GRSGKSCRLR WCNQLSPQVE  60
HRAFTPEEDE TIINAQALYG NKWATIARLL SGRTDNAIKN HWNSTLKRKC SSMADESGGC  120
NTSSPPLKRS VSAGVYMPPN SPSGSDVSDS GFFPAVSSSH VYRPVARTGG VLPPGETVSS  180
SNDPPTSLSL SLPGADSSEV NFVANSLPAM AGVSERPSTA LPSSAPANGQ EQISGEKDER  240
NYNGFGILSS DLMAVMQEMI RKEVRNYMAG LMEQNVGGGG GGGVCFQQAT VGGFRNVVVQ  300
RIGVSKID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-3961124110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462845.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231604e-89MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1S3CID00.0A0A1S3CID0_CUCME; transcription factor MYB44-like
STRINGXP_008462845.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-92myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]