PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ERF

Protein Properties

Length: 192aa MW: 21566.8 Da PI: 7.1367

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla006719	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.8	6.5e-19	36	87	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++++GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ Cla006719 36 PKFRGVRLRT-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 87 79***998.******843...6*********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.47E-30	36	94	No hit	No description
Pfam	PF00847	1.4E-13	36	87	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.919	37	94	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-31	37	95	IPR001471	AP2/ERF domain
SMART	SM00380	8.5E-36	37	100	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-21	37	95	IPR016177	DNA-binding domain
PRINTS	PR00367	8.4E-10	38	49	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.4E-10	60	76	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MTTNSYHSTT SSSAVTSRKR QRSTTTTESE SEESTPKFRG VRLRTWGKWV SEIREPRKKS 60 RIWLGTYPTA EMAARAHDVA ALAIKGHRAF LNFPQLKHHL PRPASLSAKD IQAAAAQAAA 120 IKQEPETTSC EDEDTWFDLP DLITNGFLLG FDHYSSSPSS SSSSSPWQFL ADDHDDHHLQ 180 WHSDFSHIIF PA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-16	37	94	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022959279.1	6e-85	ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	8e-43	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1S3CBH6	2e-82	A0A1S3CBH6_CUCME; ethylene-responsive transcription factor ERF039-like
STRING	XP_008460188.1	3e-83	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24549	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	5e-40	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]