PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006693
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 423aa    MW: 47569.4 Da    PI: 4.9413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006693genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13251297354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI+ L
  Cla006693 251 MNHVEAERQRREKLNNRFYALRSVVPNV-----SRMDKASLLSDAVSYINTL 297
                689************************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.5E-3918171IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.09E-17240310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.091248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-14251300No hitNo description
PfamPF000101.5E-10251297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16252313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-15254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEELAVSPSS SSPSSLLHRL QFLLHTQPLP WAYAIFWQTT TDDNGAFFLS WREGHFQAPY  60
KPTSSSPDHS HSPPLLPNDP MDLDWFYMMS LTRTFAPGDG LPGKSFSSGS VVWLAGPDDL  120
ELYDCHRVKE AKSHGIQTLL CIPTSYGVLE LASQQIILED WGLIQQIKSL FDSDISNFTN  180
SSSSPLPFLD QDFNFEDMGF ISEVPEEEME TPTKKKSKTG EWEMSDSDSP VAKRTGQKRG  240
RKPNMSKENA MNHVEAERQR REKLNNRFYA LRSVVPNVSR MDKASLLSDA VSYINTLKAK  300
MEEMELQLRE SKKSKEDEGG ESMDNHSTTT SEEQTKGNNA TATVGFDVEV KIIGEDAMVR  360
VQSQNLNFPS AIVMGVFRDM EFQIHHASIT NVNDFMLQDV LIKLPHGFST NEALKAAILS  420
RLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-24151728193Transcription factor MYC3
4rqw_B1e-24151728193Transcription factor MYC3
4rs9_A1e-24151728193Transcription factor MYC3
4yz6_A1e-24151728193Transcription factor MYC3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819252e-75LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132652e-75LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902487.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1S4E2N50.0A0A1S4E2N5_CUCME; transcription factor MYC2-like
STRINGXP_004166899.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.19e-61bHLH family protein