PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cla006673

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 460aa MW: 49136.9 Da PI: 5.267

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla006673	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.2e-05	301	323	33	55
.TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 ++s++ +Ka++L +++eY+k+Lq Cla006673 301 NQSERTDKASMLDEVIEYLKQLQ 323 5899******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.03E-4	300	327	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-6	301	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-7	302	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MSQCVPNWDL SEPPPSAAAG RPPFHSSSAA DDVVPMFEYE VAELTWENGQ LAMHGMGLPR 60 VTGKIQNGGG GSGGGAGSKY TWDNKPARAS GTLESLVNQG TRQCKNISFD INTDDTGDGG 120 ANDLVPWFSD HHRQTPTASA ATAMDAMVPC DGDKAAAGGG AGKSAVESSD IAGVAREEEE 180 DCRVIHGKRA RVVARVVHAE REWSGCRNQI SVSGSRESGQ KVTLNTRDRN FAAVDGGVGF 240 TATTTTTQGS LDNTSSDKPY VKNTTTDDHD SVEEEDEGDI KKENAKSSVS TKRSRAAAIH 300 NQSERTDKAS MLDEVIEYLK QLQAQVQMMS RINMPMMLPM AMQQQQLPMA SLMAPMGLGM 360 GMAGMGMTLG MDHLNMMASR SGLATGMSTL LHPTAFMPIP TWDGGTSDQL QHSPSTMMAD 420 PFSAFLACQP QPMTMEAYNR IATMFQQLHQ HPPTVGGSKN

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MSQCVPNWDL SEPPPSAAAG RPPFHSSSAA DDVVPMFEYE VAELTWENGQ LAMHGMGLPR  60
VTGKIQNGGG GSGGGAGSKY TWDNKPARAS GTLESLVNQG TRQCKNISFD INTDDTGDGG  120
ANDLVPWFSD HHRQTPTASA ATAMDAMVPC DGDKAAAGGG AGKSAVESSD IAGVAREEEE  180
DCRVIHGKRA RVVARVVHAE REWSGCRNQI SVSGSRESGQ KVTLNTRDRN FAAVDGGVGF  240
TATTTTTQGS LDNTSSDKPY VKNTTTDDHD SVEEEDEGDI KKENAKSSVS TKRSRAAAIH  300
NQSERTDKAS MLDEVIEYLK QLQAQVQMMS RINMPMMLPM AMQQQQLPMA SLMAPMGLGM  360
GMAGMGMTLG MDHLNMMASR SGLATGMSTL LHPTAFMPIP TWDGGTSDQL QHSPSTMMAD  420
PFSAFLACQP QPMTMEAYNR IATMFQQLHQ HPPTVGGSKN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656866.1	0.0	PREDICTED: transcription factor UNE10
TrEMBL	A0A0A0KCL1	0.0	A0A0A0KCL1_CUCSA; Uncharacterized protein
STRING	XP_008459727.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5676	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-65	bHLH family protein