PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006673
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 460aa    MW: 49136.9 Da    PI: 5.267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006673genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.2e-053013233355
                .TTS-STCHHHHHHHHHHHHHHH CS
        HLH  33 apskKlsKaeiLekAveYIksLq 55 
                ++s++ +Ka++L +++eY+k+Lq
  Cla006673 301 NQSERTDKASMLDEVIEYLKQLQ 323
                5899******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.03E-4300327No hitNo description
Gene3DG3DSA:4.10.280.103.7E-6301334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-7302348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSQCVPNWDL SEPPPSAAAG RPPFHSSSAA DDVVPMFEYE VAELTWENGQ LAMHGMGLPR  60
VTGKIQNGGG GSGGGAGSKY TWDNKPARAS GTLESLVNQG TRQCKNISFD INTDDTGDGG  120
ANDLVPWFSD HHRQTPTASA ATAMDAMVPC DGDKAAAGGG AGKSAVESSD IAGVAREEEE  180
DCRVIHGKRA RVVARVVHAE REWSGCRNQI SVSGSRESGQ KVTLNTRDRN FAAVDGGVGF  240
TATTTTTQGS LDNTSSDKPY VKNTTTDDHD SVEEEDEGDI KKENAKSSVS TKRSRAAAIH  300
NQSERTDKAS MLDEVIEYLK QLQAQVQMMS RINMPMMLPM AMQQQQLPMA SLMAPMGLGM  360
GMAGMGMTLG MDHLNMMASR SGLATGMSTL LHPTAFMPIP TWDGGTSDQL QHSPSTMMAD  420
PFSAFLACQP QPMTMEAYNR IATMFQQLHQ HPPTVGGSKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656866.10.0PREDICTED: transcription factor UNE10
TrEMBLA0A0A0KCL10.0A0A0A0KCL1_CUCSA; Uncharacterized protein
STRINGXP_008459727.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-65bHLH family protein