PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006667
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family SBP
Protein Properties Length: 291aa    MW: 32093.5 Da    PI: 7.8426
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006667genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.6e-41158235178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q+
  Cla006667 158 RCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVITAGLTQRFCQQCSRFHVLAEFDNGKRSCRKRLADHNRRRRKTQQ 235
                6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-34154220IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.06156233IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-38157237IPR004333Transcription factor, SBP-box
PfamPF031103.1E-31159232IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MLDYEWASTN PPPIILSGEE SEPGFNADPT HSHNFPTFVD HHHNTFFPPP PPPPPSTAAF  60
SSHYGGFYDN PQSYTMGPSS HHYDAVAGGG GEFVVVPKSE DVCGNIAGAA PVEFAARIGL  120
NLGGRTYFSS EEEEYVNRMY RRTRTGGEIG GSGNWTARCQ AEGCNADLSQ AKHYHRRHKV  180
CEFHSKASTV ITAGLTQRFC QQCSRFHVLA EFDNGKRSCR KRLADHNRRR RKTQQSHQGS  240
PKPSQPLETT TSSTDSAARL AMESTGQSAW SVTMAVPPAR MSMDCLNQRP Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32150232184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819240.0LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458127.11e-174PREDICTED: squamosa promoter-binding-like protein 8
RefseqXP_008458128.11e-174PREDICTED: squamosa promoter-binding-like protein 8
TrEMBLA0A1S3C8D31e-173A0A1S3C8D3_CUCME; squamosa promoter-binding-like protein 8
STRINGXP_008458127.11e-173(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-65squamosa promoter binding protein-like 8