PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla006505 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 28415 Da PI: 7.898 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 91 | 113 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Cla006505 91 SCSVCPRVYPTSRLLSLHVSEaH 113 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.37 | 63 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 65 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.3 | 90 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 92 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 128 | 153 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 130 | 153 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MELESQSEFP YWKPFQRRFD PDSPFFASGN VEREILAKQV ALDLTEDEKV QLHNMAVDAS 60 SEIFCPIVGC GAHLKSLDDF EDHYNSRHTA SCSVCPRVYP TSRLLSLHVS EAHDSFFQAK 120 VARGYDMYEC LVEGCGLKFK SYKSRQQHLV DKHKFSASFE FFKKAHPSKK QRQKLHRKQA 180 LQGWEETSEM EVENETIDGL ISGVSKLTTS DLTPSSISFG RRHTRGLQFL PRAVQREKVS 240 DSSTAGTKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681815 | 1e-156 | LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008. | |||
GenBank | LN713257 | 1e-156 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008441334.1 | 1e-175 | PREDICTED: zinc finger protein 511 | ||||
Refseq | XP_008441335.1 | 1e-175 | PREDICTED: zinc finger protein 511 | ||||
TrEMBL | A0A1S3B3Y4 | 1e-174 | A0A1S3B3Y4_CUCME; zinc finger protein 511 | ||||
STRING | XP_008441334.1 | 1e-174 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9718 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-106 | zinc ion binding;nucleic acid binding;zinc ion binding |