PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006289
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 447aa    MW: 49402.9 Da    PI: 6.9604
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006289genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12367412655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR +i +++ +L+el+P+     +k  + +++L +AveYIk Lq
  Cla006289 367 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVEYIKGLQ 412
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.557361411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-15364420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-11365416No hitNo description
Gene3DG3DSA:4.10.280.104.6E-14366421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9367412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-13367417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MEADFQQRHH ILHEHHQQQP QMNSGLTRYR SAPSSYFRSL TDREFCDQFF NRPSSPETER  60
IFARFMTSGS AGGGGGDPEG SSQNLDESQK AGEMLLTTEA NQQTPYVSNE TRAIHQPPSN  120
VNSNYPPVSS TPSFYQSSMK PPLPNQGMIS GTDGSGSMGI DLKPRIRTDG GRTSNLIRQS  180
SSPAGLFDHI KINDSGYAAL RSMGNCGTRS SFNEEASFSS PSRLKNFSPR NLPPHSSGLM  240
SPMVGIEKKS IRETNQDTKS FAESQTSDYG STSFPVGSWE ESAVMSDNVV GQKPLEDNDD  300
DEKSYSNFNI SDTQKVDPGN RPPLLAHHLS LPNTSAEMNA IEKILQFSDS VPCKLRAKRG  360
CATHPRSIAE RVRRTKISER MRKLQELVPN MDKQTNTSDM LDLAVEYIKG LQKQVQIIVQ  420
NVSAHIVSIN NENGIGVEIL VYRAIPI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818071e-178LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132561e-178LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450443.10.0PREDICTED: transcription factor bHLH122 isoform X1
RefseqXP_008450444.10.0PREDICTED: transcription factor bHLH122 isoform X1
RefseqXP_016900867.10.0PREDICTED: transcription factor bHLH122 isoform X1
TrEMBLA0A1S4DY090.0A0A1S4DY09_CUCME; transcription factor bHLH122 isoform X1
STRINGXP_008450443.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-73bHLH family protein