PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cla006226

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Trihelix

Protein Properties

Length: 953aa MW: 106603 Da PI: 6.783

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla006226	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.2	1e-08	204	256	23	75
trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 +gk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e+ Cla006226 204 SGKTRADKDREVAEYLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQ 256 4678888999*************************************996555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	2.23E-13	785	937	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	4.6E-5	788	934	No hit	No description
CDD	cd00180	4.49E-11	792	933	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence Send to blast
MGEKGETPQP QDYDSSSPKD PLDDSLETRP HGGGHPPPNP HHHHQHHDSS LIVATPFIST 60 PLYHPTTIPN TAPFEAVNPK RTRYTAGQWK LLPSPTTPQP PIPVVGSDSS PSPSQRPAGT 120 STVAAASSSD TTSSPSHSPL PAGSKGEGES QNQPQYRKGK YVSPVWKPNE MLWLARAWRV 180 QYQGGGSSDE IGGGIVGGQG GRGSGKTRAD KDREVAEYLQ KHGVNRDAKT AGTKWDNMLG 240 EFRKVYEWER GGEREQLVGK SYFRLSPYER KLHRLPASFD EQVFEELSQF MGSKMRNKPT 300 PLLPLTTSLP PPPPFRDHHD RAKQVFGVGY GSGDASGNPS CHSIRRIGKV RMVWEESVNL 360 WSEEGVGEEQ RSGGRIRVEG CGFLNAEELT FFDESMVACT MESYDHGPLK GYSVDRFVSG 420 QQIKVFGRRK SPSATPTFYT STAPPHRLSL LHSTELPSRS NTSWDYQDPT EYYVGCLRIP 480 PTSLPSLSGL SWHIQDPPSE ELRFPVRKDV YAYLPQGKEV MFTTTTEMLD CKSFINEIIC 540 PIIRTNPCIS IPSSRDSFIS LWDDCINRLV SEFCCMEMQL IRKPNNYSPS SSTTTTTDNL 600 QDEWPNVTGF IRNFCLWRGE ETDQIKDNGL NPSNSIVDKL LWTYLDIPYV LGYYAIGYLV 660 TFCALSRGQD NRIIRTDLYS LDLSAPSERL KALVPCYRIG GILSLLAEQC QKLGIPSDFE 720 RFDMGNGIVV EMTPNLIIKI FSCRRKWTAV KEIYDFLDQR IPHSEFIIGS MEKDLALVFK 780 PRVCKLRPTS YEQLIEALKN VSKALVALHD LCFMHRDICW EKVMKKRSDF DEGEDNEETR 840 RVKGEWILCG FEEAVGAPQI YPYGEVSTAA SGRHAPEMER GLHGVKVDMW GVGFLIKTCG 900 LIGIPKMLME LQNRCMDQNP EHRPTAADCY HHLLQLQSSL STTTGAAGGG GLM

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence Send to blast

MGEKGETPQP QDYDSSSPKD PLDDSLETRP HGGGHPPPNP HHHHQHHDSS LIVATPFIST  60
PLYHPTTIPN TAPFEAVNPK RTRYTAGQWK LLPSPTTPQP PIPVVGSDSS PSPSQRPAGT  120
STVAAASSSD TTSSPSHSPL PAGSKGEGES QNQPQYRKGK YVSPVWKPNE MLWLARAWRV  180
QYQGGGSSDE IGGGIVGGQG GRGSGKTRAD KDREVAEYLQ KHGVNRDAKT AGTKWDNMLG  240
EFRKVYEWER GGEREQLVGK SYFRLSPYER KLHRLPASFD EQVFEELSQF MGSKMRNKPT  300
PLLPLTTSLP PPPPFRDHHD RAKQVFGVGY GSGDASGNPS CHSIRRIGKV RMVWEESVNL  360
WSEEGVGEEQ RSGGRIRVEG CGFLNAEELT FFDESMVACT MESYDHGPLK GYSVDRFVSG  420
QQIKVFGRRK SPSATPTFYT STAPPHRLSL LHSTELPSRS NTSWDYQDPT EYYVGCLRIP  480
PTSLPSLSGL SWHIQDPPSE ELRFPVRKDV YAYLPQGKEV MFTTTTEMLD CKSFINEIIC  540
PIIRTNPCIS IPSSRDSFIS LWDDCINRLV SEFCCMEMQL IRKPNNYSPS SSTTTTTDNL  600
QDEWPNVTGF IRNFCLWRGE ETDQIKDNGL NPSNSIVDKL LWTYLDIPYV LGYYAIGYLV  660
TFCALSRGQD NRIIRTDLYS LDLSAPSERL KALVPCYRIG GILSLLAEQC QKLGIPSDFE  720
RFDMGNGIVV EMTPNLIIKI FSCRRKWTAV KEIYDFLDQR IPHSEFIIGS MEKDLALVFK  780
PRVCKLRPTS YEQLIEALKN VSKALVALHD LCFMHRDICW EKVMKKRSDF DEGEDNEETR  840
RVKGEWILCG FEEAVGAPQI YPYGEVSTAA SGRHAPEMER GLHGVKVDMW GVGFLIKTCG  900
LIGIPKMLME LQNRCMDQNP EHRPTAADCY HHLLQLQSSL STTTGAAGGG GLM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652770.1	0.0	PREDICTED: uncharacterized protein LOC101212506
TrEMBL	A0A0A0L5Q9	0.0	A0A0A0L5Q9_CUCSA; Uncharacterized protein
STRING	XP_008439395.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-08	Trihelix family protein