 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cla006114 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
| Family |
C2H2 |
| Protein Properties |
Length: 290aa MW: 32000.4 Da PI: 8.4593 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla006114 | genome | ICuGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.3 | 0.00053 | 224 | 246 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+Cp C+ Fs+ s+L H + H
Cla006114 224 QCPQCSSKFSSVSSLIDHVEKvH 246
7*****************99888 PP
|
| 2 | zf-C2H2 | 15 | 7e-05 | 263 | 284 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23
Cp+C++ F ++ L+ Hi + H
Cla006114 263 CPKCSRGFVDPVALVEHIEKdH 284
******************9988 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF118310 | 1.1E-12 | 4 | 60 | No hit | No description |
| PROSITE profile | PS51039 | 7.982 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
| Gene3D | G3DSA:4.10.1110.10 | 4.7E-11 | 10 | 53 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 8.7E-5 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 1.9E-13 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
| Gene3D | G3DSA:4.10.1110.10 | 2.6E-10 | 91 | 144 | IPR000058 | Zinc finger, AN1-type |
| SuperFamily | SSF118310 | 2.62E-8 | 93 | 144 | No hit | No description |
| PROSITE profile | PS51039 | 7.826 | 98 | 147 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 0.026 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 1.1E-6 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00355 | 0.053 | 223 | 246 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 8.871 | 223 | 246 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13894 | 0.0011 | 224 | 246 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 225 | 246 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 11 | 261 | 284 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 8.538 | 261 | 289 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 263 | 284 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MGTPEFPNLG KHCNFQDCKQ IDFLPFTCDC CNQVFCLEHR SYNRHSCPKA DKWDVTVVIC 60
PLCAKGVRLI PEQDPNITWE VHVNTECDPS NYDKVTKKKK CPVPRCREFL TFSNTIKCRD 120
CLVDHCLKHR FGPDHKCPGP KKPEPAGFPF VGLLSRSRKE EKGPKKALPT SSSSKWTTAF 180
LNAASSVKAS AEASMTKLSN EFSQTWITSG SSSNGRGGNG QVEQCPQCSS KFSSVSSLID 240
HVEKVHERGG NRPGAKTVVI DACPKCSRGF VDPVALVEHI EKDHGGTSRA
|
| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in environmental stress response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ870302 | 0.0 | AJ870302.1 Cucumis sativus mRNA for somatic embryogenesis zinc finger 2 (SEF2 gene). |
