PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla006061

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 274aa MW: 30391.1 Da PI: 7.0169

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla006061	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	1.9e-10	145	187	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++r+RR ri +++e L+ellP++ K + a+ L ++++Ik+Lq Cla006061 145 ADRQRRIRIAERLEALQELLPQS-----SKGNQASALDDVIDHIKYLQ 187 68******************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.779	137	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-10	139	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-8	143	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-9	145	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-7	145	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-8	145	191	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEGQNGCNNS VRKLSLNFGA NVNIVSQTPG DSTNYHHVLP ADRNVNQTNY PHLTEWTQTA 60 KTSPAFVEFI AETSNFPRKA STKDVVAVVP STVQTINGVS ELRGEISYNH LTCSYSSKPT 120 DSRNNAPGIL SKSRPSSSSR RGYSADRQRR IRIAERLEAL QELLPQSSKG NQASALDDVI 180 DHIKYLQLQI KKKLRHPYVV AQDLSQSKLG GESSSEPFIF VEGYGHYMSH QEMHSEPLEE 240 MVGKLLEVDP LAAAQLLENK GLFVMPMDFV EGLC

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	1e-139	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	1e-139	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022995865.1	1e-162	transcription factor bHLH69-like isoform X3
Refseq	XP_022995866.1	1e-162	transcription factor bHLH69-like isoform X3
Refseq	XP_022995867.1	1e-162	transcription factor bHLH69-like isoform X3
Refseq	XP_023533990.1	1e-162	transcription factor bHLH69-like
TrEMBL	A0A0A0KHM8	1e-146	A0A0A0KHM8_CUCSA; Uncharacterized protein
STRING	XP_004158633.1	1e-149	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12164	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	5e-14	LJRHL1-like 2