PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006031
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 375aa    MW: 43177 Da    PI: 5.074
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006031genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.81.6e-28431572102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT..............XTTSEEEEES CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks..............kekiweFkhk 84 
                   Fl k++++++d+ ++++isw + g sf+v+d++ f+ ++Lp++Fkh+nf+SF+RQLn+Y  ++  + +                   +++ weF+++
     Cla006031  43 FLIKTFDMVDDPITDHIISWGRGGISFIVWDPKAFSVNLLPRFFKHNNFSSFIRQLNTYFSESCFSVHLVGVGifekelcfqgfrkiNPERWEFANE 139
                   9**********************************************************666666666554448888888877776559******** PP

                   XXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                    F +g+k+ll++i+r+k 
     Cla006031 140 GFLRGQKHLLRTIRRRKP 157
                   ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-4539155IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-2839155IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.1E-3340155IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-2643155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-134366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-138193IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1394106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNPHYPVKEE DWGPTSSEVA GGYVLPPTPQ PMEGLYGVAP PPFLIKTFDM VDDPITDHII  60
SWGRGGISFI VWDPKAFSVN LLPRFFKHNN FSSFIRQLNT YFSESCFSVH LVGVGIFEKE  120
LCFQGFRKIN PERWEFANEG FLRGQKHLLR TIRRRKPPNS DPLPPEQEAG ACVEIGRFGL  180
DAELDRLKRD KQVVMMELIK LRREQQNTRA YLQAMEQKLR GTEMKQRQMM KFLARAMQNP  240
DFIHQLNQQK KKRDIEEAAT KKRRRPIDQG PSSSRDIEEG ISNPIKIEPI EFCGYEVSEL  300
EALALEMQGL GKAVKKETEV NKEMQQPPET GDTELDEGFW EEFFSGRTEE EDDDDDNDNV  360
VKALSDRFGY LGSIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-184115518120Heat shock factor protein 1
5d5u_B7e-184115527129Heat shock factor protein 1
5d5v_B7e-184115527129Heat shock factor protein 1
5d5v_D7e-184115527129Heat shock factor protein 1
5hdg_A6e-18411558110Heat shock factor protein 1
5hdn_A6e-18411558110Heat shock factor protein 1
5hdn_B6e-18411558110Heat shock factor protein 1
5hdn_C6e-18411558110Heat shock factor protein 1
5hdn_D6e-18411558110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250264KKRDIEEAATKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004154162.10.0PREDICTED: heat stress transcription factor A-7a
RefseqXP_011649187.10.0PREDICTED: heat stress transcription factor A-7a
RefseqXP_011649188.10.0PREDICTED: heat stress transcription factor A-7a
SwissprotQ9LUH81e-111HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0A0LNX50.0A0A0A0LNX5_CUCSA; Uncharacterized protein
STRINGXP_004164906.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-112heat shock transcription factor A6B