PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006015
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 251aa    MW: 27970.9 Da    PI: 10.2125
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006015genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32184243260
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                +D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+k
  Cla006015 184 SDDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHPK 243
                69************************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-17142181IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.2E-35171243IPR003657WRKY domain
PROSITE profilePS5081130.986178244IPR003657WRKY domain
SuperFamilySSF1182904.84E-28181243IPR003657WRKY domain
SMARTSM007749.3E-40183243IPR003657WRKY domain
PfamPF031065.4E-28185242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEEVEEANKS AIESCHGVLN LLVQPPQDQL HFRNLMVETK EAVFKFKKVI SLLNSGFGHA  60
RVRKFNKIPL PLPQKSLLDS PNYTPHPPNK NLYPFHSGLN ARSFISSLSM DGSVADGSSF  120
HLIGPSSTTT TSADNKRKFS ARGDEGSLKC GSSGKCHCSK KRKHRVKRSI KVPAISNKLA  180
DIPSDDYSWR KYGQKPIKGS PHPRGYYKCS SMRGCPARKH VERCLEDPSM LIVTYEGEHN  240
HPKMSTQSAH T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21171241271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840121e-168GU984012.1 Cucumis sativus WRKY protein (WRKY9) mRNA, complete cds.
GenBankGU9840131e-168GU984013.1 Cucumis sativus WRKY protein (WRKY10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022967410.11e-138probable WRKY transcription factor 21
SwissprotO043366e-77WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A455PAJ41e-129A0A455PAJ4_CUCMO; WRKY21
STRINGGSMUA_Achr9P10740_0011e-101(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-79WRKY DNA-binding protein 21