PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005809
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 246aa    MW: 26661.7 Da    PI: 7.5583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005809genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004588110123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C + F ++  L  H++ H
  Cla005809  88 FSCNYCRRKFFSSQALGGHQNAH 110
                89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-686116No hitNo description
PROSITE profilePS5015711.30288115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEALNLNLAK DSEPSSSQEA NPDRSNAAAT TSSCPPSSSK VVVADTLPIS LDLTLQFNSN  60
DIDSKGEGEI QGETSSNKSS SSAMPRVFSC NYCRRKFFSS QALGGHQNAH KRERTMAKRV  120
TRMGMFFDRY GSLASLPLHG SALRSLGIEA HGALHQTVLA SDQRPYPGRS VGAKFEQSSF  180
GFPTFIDDYD DDVGMFWPGS FRQVAAKVDS SLGPLKTTVQ NSNPEFGKTM PPPRTETSSP  240
DLTLRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466973.11e-166PREDICTED: zinc finger protein 7-like
RefseqXP_008466976.11e-166PREDICTED: zinc finger protein 7-like
TrEMBLA0A1S3CTQ81e-164A0A1S3CTQ8_CUCME; zinc finger protein 7-like
STRINGXP_008466973.11e-165(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.15e-37zinc finger protein 4