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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla005809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 26661.7 Da PI: 7.5583 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Cla005809 88 FSCNYCRRKFFSSQALGGHQNAH 110 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.19E-6 | 86 | 116 | No hit | No description |
PROSITE profile | PS50157 | 11.302 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEALNLNLAK DSEPSSSQEA NPDRSNAAAT TSSCPPSSSK VVVADTLPIS LDLTLQFNSN 60 DIDSKGEGEI QGETSSNKSS SSAMPRVFSC NYCRRKFFSS QALGGHQNAH KRERTMAKRV 120 TRMGMFFDRY GSLASLPLHG SALRSLGIEA HGALHQTVLA SDQRPYPGRS VGAKFEQSSF 180 GFPTFIDDYD DDVGMFWPGS FRQVAAKVDS SLGPLKTTVQ NSNPEFGKTM PPPRTETSSP 240 DLTLRL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466973.1 | 1e-166 | PREDICTED: zinc finger protein 7-like | ||||
Refseq | XP_008466976.1 | 1e-166 | PREDICTED: zinc finger protein 7-like | ||||
TrEMBL | A0A1S3CTQ8 | 1e-164 | A0A1S3CTQ8_CUCME; zinc finger protein 7-like | ||||
STRING | XP_008466973.1 | 1e-165 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 5e-37 | zinc finger protein 4 |