PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005790
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARF
Protein Properties Length: 1104aa    MW: 121663 Da    PI: 6.4321
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005790genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.5e-23130231199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l++
  Cla005790 130 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEKQQLLL 226
                99*****************************9445444.38************************************************..5688889** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  Cla005790 227 GIRRA 231
                **997 PP
2Auxin_resp119.52.6e-39256339183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr+L+
   Cla005790 256 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQ 339
                 79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-43119259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-41121245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-19129221No hitNo description
PfamPF023623.0E-21130231IPR003340B3 DNA binding domain
SMARTSM010197.7E-23130232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083130232IPR003340B3 DNA binding domain
PfamPF065071.3E-34256339IPR010525Auxin response factor
PfamPF023093.3E-79901077IPR033389AUX/IAA domain
PROSITE profilePS5174527.4299921077IPR000270PB1 domain
SuperFamilySSF542774.84E-710051071No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1104 aa     Download sequence    Send to blast
MKTPANGAAG AAAAPNSNEG GLEKKIINPE LWQACAGPLV NLPPAGYHVV YFPQGHSEQV  60
AASLRKDVDG QVPNYPNLPS KLLCLLHNAD PETDEVYAQM TLLPVPSFDK DALLRSDLAL  120
KSNKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPAQEL VAKDLHDNVW  180
TFRHIYRGQP KRHLLTTGWS LFVSGKRLLA GDSVLFIRDE KQQLLLGIRR ANRQPTNLSS  240
SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRASPSEFV IPLAKYYKAV SANQISLGMR  300
FRMMFETEES GTRRYMGTIT GISDLDPVRW KGSQWRNLQV GWDESTGGER RNRVSIWEIE  360
PVIAPFFICP SPFLRSKRPR QPGMPDDDSS DLDGIFKRTM FGDDFCMKDP QGYPGLNLVQ  420
WMNMQNPSLS NSMQPNYMHS FSGSMLPNLG GVDISRQLGL SSAQIPQSNN IQFNAQRLLS  480
QAQQLDQLPK LPSSMNSLGS VVQAPQQLDD MSQQTRQNLI NQNAVSSQIQ AQIMQQPHTT  540
GILQQQTALQ NPQLQRNVPQ NLQMQQHQQI LGQNQQQTMN QSPLPEQLNH QLQMSDNQVQ  600
MQMLQKFQQQ QQQSILAQQS ALQPAQLTQL PEQQRQSVDA SQSFSRSMST NQMLDIPQST  660
PVAGPPSNAL PQQTANCNSQ TNNRFSNQHL QPKLPQLQQP PPSTVLSDMS RPMGLPPTQT  720
NNQLSAATSS LITGAAGAGQ SGITDDIPSC STSPSTNNCP SLVQPVANGR VHRTTGLVED  780
VAQSAATIFS SNTLDTMSPN ANLVHKDLPQ KTAVKPSLNI SKNQSHGIFA QQTFLSGVVA  840
QTDFLDTSSS TTSACLSQND AQLQQNNMMS FNSQPMLFKD STQDLEVPTD LHNIPYGAHV  900
DGQMVTQLNS DPLLDKGIGG LGKDFSNNFS SGAMLTTYDV QKDPQQEISS SIVSQSFGIP  960
DMTFNSMDST INDNAFLNRN QWAPPPPFQR MRTYTKVYKR GAVGRSIDIT RYSGYDELKQ  1020
DLARRFGIEG QLEDRQKIGW KLVYVDHEND VLLVGDDPWE DFVNCVRSIK ILSPQEVQQM  1080
SLDGDFSNGV LPNQACSSSD GGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651836042388Auxin response factor 5
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1126720.0AB112672.1 Cucumis sativus CsARF2 mRNA for auxin response factor 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648969.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A0A0LGX60.0A0A0A0LGX6_CUCSA; Auxin response factor
STRINGXP_004168159.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19