![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla005712 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 78aa MW: 8593.04 Da PI: 10.6217 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.5 | 7.1e-18 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n r tf kR+n ++KKA+ELS+LCd++ +v+i ++ Cla005712 11 IPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPA 51 77899999*****************************9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.62E-19 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.9E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.586 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 5.28E-20 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 1.2E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-17 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 78 aa Download sequence Send to blast |
MGRGKLSLNL IPNRKSRIST FKKRKNSLMK KAYELSTLCD VRTCVLIHGP ASSSTEDPST 60 QSELEFTLGL PIAPTSKL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022935361.1 | 1e-25 | agamous-like MADS-box protein AGL14 | ||||
Refseq | XP_022983430.1 | 1e-25 | agamous-like MADS-box protein AGL14 | ||||
TrEMBL | A0A0A0LME6 | 1e-18 | A0A0A0LME6_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3CDG6 | 1e-18 | A0A1S3CDG6_CUCME; MADS-box protein SOC1-like | ||||
STRING | XP_008460878.1 | 2e-19 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G55690.1 | 2e-14 | M-type_MADS family protein |