PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005685
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 367aa    MW: 41883.9 Da    PI: 9.463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005685genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00013119142123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y C  Cg+ F +++ L++H +  H
  Cla005685 119 YLCRVCGRNFYTNEKLVNHFKQiH 142
                56*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.9E-1137122IPR029060PIN domain-like
SuperFamilySSF576675.55E-5118144No hitNo description
PROSITE profilePS5015712.071119147IPR007087Zinc finger, C2H2
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-4123143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061678.18E-14125272No hitNo description
PfamPF019363.9E-10191271IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.9E-11204259IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MITLVRFRNL SYKFRNETDL IRCFHSGTNL KSNSPDSSSS TVAIFWDLDN KPPKSLPPYE  60
AAVKLKAAAA SFGAVRYMVA YANRHAFSYV PQVVREQRRE RKMLNQLESK GVIKSIEPYL  120
CRVCGRNFYT NEKLVNHFKQ IHESEHKKRL NQIESAKGSR RVKLLAKYSM KIQKYKNAAR  180
DVLTPKVGYG LADELKRAGF FVKTVSDKPE AADVELRNDM VEIMDRKRAE CLVLVSDDSD  240
FVDVLKEARL RCLRTVVVGD LNDGPLKRNA DTGFSWKEIL MGKAKKEAVS VVGKWKDRDV  300
LKRLEWTYNP QLEKKVFGLD DIGEDEDVEE GSVDGGLCKN MQNDDRGAWW DLSSDADTET  360
VSPPSWK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448905.10.0PREDICTED: uncharacterized protein LOC103490929
TrEMBLA0A1S3BKT20.0A0A1S3BKT2_CUCME; uncharacterized protein LOC103490929
STRINGXP_008448905.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-123C2H2 family protein