PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005515

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WRKY

Protein Properties

Length: 292aa MW: 33087.7 Da PI: 8.0567

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005515	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.9	8.5e-33	153	210	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers +dp+vv++tYeg+Hnh+ Cla005515 153 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHH 210 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-34	137	212	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-29	145	212	IPR003657	WRKY domain
PROSITE profile	PS50811	32.271	147	212	IPR003657	WRKY domain
SMART	SM00774	1.1E-37	152	211	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	153	210	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MSNDEGKNVY QQYDPFQYNQ LDMNRSIFHQ QAATLDPALM SFTNFFDTSL DYNSLSKAFD 60 VSCCSSEVIS AVDDRSKSKK ASTTTPNSSV SSSSNEAVVE EDSVKSNKED IKGCENKDEE 120 KSKKQNSITK KKEKRQREPR FAFLTKSEID HLEDGYRWRK YGQKAVKNSP YPRSYYRCTS 180 QKCVVKKRVE RSYQDPSVVI TTYEGQHNHH CPATLRGHSA GIMSSPFYAS ASTSVTAASS 240 GPTLPQELFS HLLPTNNCQT DPASMMYQNL SLQQHLQMPD HYGLLQDLFT QK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-29	145	213	10	78	Probable WRKY transcription factor 4
2lex_A	4e-29	145	213	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	KEKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681800	1e-166	LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBank	LN713255	1e-166	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008447132.1	0.0	PREDICTED: probable WRKY transcription factor 71 isoform X1
Swissprot	Q8VWJ2	1e-53	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A1S3BHB3	0.0	A0A1S3BHB3_CUCME; probable WRKY transcription factor 71 isoform X1
STRING	XP_008447132.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2231	34	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	1e-48	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]